Hb_002435_020

Information

Type -
Description -
Location Contig2435: 55911-61481
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002435_020 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_000069_580 0.0389535242 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002259_180 0.0631751112 - - -
4 Hb_008221_020 0.067915381 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
5 Hb_006355_120 0.0814052274 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001410_050 0.0864382395 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_001246_050 0.1867330365 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
8 Hb_005946_180 0.2142239212 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
9 Hb_000139_210 0.2226783567 - - -
10 Hb_000264_330 0.2252636296 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
11 Hb_004970_080 0.2339921572 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
12 Hb_001950_130 0.2363136157 - - -
13 Hb_011174_030 0.2365327851 - - -
14 Hb_010534_030 0.2375410702 - - calcineurin-like phosphoesterase [Manihot esculenta]
15 Hb_000752_030 0.2379480104 transcription factor TF Family: bHLH hypothetical protein RCOM_0978110 [Ricinus communis]
16 Hb_001190_050 0.2647287399 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
17 Hb_002791_040 0.2690369254 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_008014_060 0.276287709 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_004163_020 0.2901007748 - - -
20 Hb_000661_210 0.2923244966 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002435_020 Hb_002435_020 Hb_000069_580 Hb_000069_580 Hb_002435_020--Hb_000069_580 Hb_002259_180 Hb_002259_180 Hb_002435_020--Hb_002259_180 Hb_008221_020 Hb_008221_020 Hb_002435_020--Hb_008221_020 Hb_006355_120 Hb_006355_120 Hb_002435_020--Hb_006355_120 Hb_001410_050 Hb_001410_050 Hb_002435_020--Hb_001410_050 Hb_001246_050 Hb_001246_050 Hb_002435_020--Hb_001246_050 Hb_000069_580--Hb_008221_020 Hb_000069_580--Hb_002259_180 Hb_000069_580--Hb_006355_120 Hb_000069_580--Hb_001410_050 Hb_000069_580--Hb_001246_050 Hb_002259_180--Hb_006355_120 Hb_002259_180--Hb_001410_050 Hb_002259_180--Hb_008221_020 Hb_005946_180 Hb_005946_180 Hb_002259_180--Hb_005946_180 Hb_008221_020--Hb_001246_050 Hb_008221_020--Hb_006355_120 Hb_008221_020--Hb_001410_050 Hb_006355_120--Hb_001410_050 Hb_006355_120--Hb_005946_180 Hb_000139_210 Hb_000139_210 Hb_006355_120--Hb_000139_210 Hb_001410_050--Hb_005946_180 Hb_001410_050--Hb_000139_210 Hb_008014_060 Hb_008014_060 Hb_001246_050--Hb_008014_060 Hb_004163_020 Hb_004163_020 Hb_001246_050--Hb_004163_020 Hb_001246_050--Hb_002259_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.108122 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0819571 0 0 0

CAGE analysis