Hb_002435_100

Information

Type -
Description -
Location Contig2435: 134702-138523
Sequence    

Annotation

kegg
ID rcu:RCOM_1205110
description zinc finger protein, putative
nr
ID XP_012065085.1
description PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
swissprot
ID Q4KLT0
description Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1
trembl
ID B9SWE7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1205110 PE=4 SV=1
Gene Ontology
ID GO:0004842
description probable e3 ubiquitin-protein ligase rnf217

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25440: 136027-138506 , PASA_asmbl_25441: 135919-137206 , PASA_asmbl_25442: 134761-137206 , PASA_asmbl_25443: 135569-135757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002435_100 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
2 Hb_007254_020 0.0627133708 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
3 Hb_000292_100 0.067638506 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
4 Hb_000230_460 0.0690887943 - - Speckle-type POZ protein, putative [Ricinus communis]
5 Hb_000035_090 0.0707731548 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
6 Hb_000230_400 0.0773835667 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000282_090 0.0785523621 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
8 Hb_000537_100 0.0833234636 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
9 Hb_001439_220 0.0833681302 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
10 Hb_029622_120 0.0855202864 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
11 Hb_001623_270 0.0886924602 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
12 Hb_000176_020 0.0936227982 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
13 Hb_002876_300 0.0943012251 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
14 Hb_000111_170 0.0955095252 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
15 Hb_000085_210 0.0960585613 - - DNA topoisomerase type I, putative [Ricinus communis]
16 Hb_000107_340 0.0980550201 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
17 Hb_005288_070 0.0984117914 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
18 Hb_002413_010 0.0984661799 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_002716_060 0.0997155322 - - carboxylesterase np, putative [Ricinus communis]
20 Hb_000868_120 0.1001909652 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002435_100 Hb_002435_100 Hb_007254_020 Hb_007254_020 Hb_002435_100--Hb_007254_020 Hb_000292_100 Hb_000292_100 Hb_002435_100--Hb_000292_100 Hb_000230_460 Hb_000230_460 Hb_002435_100--Hb_000230_460 Hb_000035_090 Hb_000035_090 Hb_002435_100--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_002435_100--Hb_000230_400 Hb_000282_090 Hb_000282_090 Hb_002435_100--Hb_000282_090 Hb_007254_020--Hb_000292_100 Hb_000373_050 Hb_000373_050 Hb_007254_020--Hb_000373_050 Hb_007254_020--Hb_000230_460 Hb_000176_020 Hb_000176_020 Hb_007254_020--Hb_000176_020 Hb_171900_090 Hb_171900_090 Hb_007254_020--Hb_171900_090 Hb_000347_250 Hb_000347_250 Hb_000292_100--Hb_000347_250 Hb_000292_100--Hb_000230_400 Hb_000029_060 Hb_000029_060 Hb_000292_100--Hb_000029_060 Hb_000086_420 Hb_000086_420 Hb_000292_100--Hb_000086_420 Hb_178968_060 Hb_178968_060 Hb_000230_460--Hb_178968_060 Hb_000230_460--Hb_000176_020 Hb_000137_010 Hb_000137_010 Hb_000230_460--Hb_000137_010 Hb_000160_140 Hb_000160_140 Hb_000230_460--Hb_000160_140 Hb_073973_090 Hb_073973_090 Hb_000035_090--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_000035_090--Hb_000375_390 Hb_002876_300 Hb_002876_300 Hb_000035_090--Hb_002876_300 Hb_003098_070 Hb_003098_070 Hb_000035_090--Hb_003098_070 Hb_000169_020 Hb_000169_020 Hb_000035_090--Hb_000169_020 Hb_005588_080 Hb_005588_080 Hb_000230_400--Hb_005588_080 Hb_000230_400--Hb_000375_390 Hb_001623_270 Hb_001623_270 Hb_000230_400--Hb_001623_270 Hb_000059_380 Hb_000059_380 Hb_000230_400--Hb_000059_380 Hb_000230_400--Hb_000035_090 Hb_002110_160 Hb_002110_160 Hb_000282_090--Hb_002110_160 Hb_000207_200 Hb_000207_200 Hb_000282_090--Hb_000207_200 Hb_004870_050 Hb_004870_050 Hb_000282_090--Hb_004870_050 Hb_000089_210 Hb_000089_210 Hb_000282_090--Hb_000089_210 Hb_002716_060 Hb_002716_060 Hb_000282_090--Hb_002716_060 Hb_002413_010 Hb_002413_010 Hb_000282_090--Hb_002413_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.9951 13.7413 16.4832 8.57128 7.54105 5.52027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.16594 11.5418 6.16552 6.26823 14.0619

CAGE analysis