Hb_002435_120

Information

Type -
Description -
Location Contig2435: 154584-155375
Sequence    

Annotation

kegg
ID rcu:RCOM_1205080
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002530313.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SZL5
description Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1
trembl
ID B9SWE4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1205080 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at4g38150-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002435_120 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000185_040 0.0723311119 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
3 Hb_000107_330 0.0730723346 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
4 Hb_001377_490 0.0824112438 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
5 Hb_000086_400 0.0828719596 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_001085_060 0.0837960432 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
7 Hb_000120_460 0.0868846275 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
8 Hb_085863_030 0.0870355862 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
9 Hb_000367_060 0.0873980172 - - diacylglycerol kinase, theta, putative [Ricinus communis]
10 Hb_010128_080 0.0881410147 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
11 Hb_089032_040 0.0882570901 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
12 Hb_000092_170 0.088376679 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
13 Hb_002585_020 0.0886321025 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]
14 Hb_002217_300 0.0903186429 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
15 Hb_000032_520 0.0905606477 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
16 Hb_009767_110 0.091395831 - - -
17 Hb_002740_180 0.0916220277 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000749_220 0.093740705 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
19 Hb_044728_010 0.0939016633 - - -
20 Hb_000066_080 0.0941205424 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002435_120 Hb_002435_120 Hb_000185_040 Hb_000185_040 Hb_002435_120--Hb_000185_040 Hb_000107_330 Hb_000107_330 Hb_002435_120--Hb_000107_330 Hb_001377_490 Hb_001377_490 Hb_002435_120--Hb_001377_490 Hb_000086_400 Hb_000086_400 Hb_002435_120--Hb_000086_400 Hb_001085_060 Hb_001085_060 Hb_002435_120--Hb_001085_060 Hb_000120_460 Hb_000120_460 Hb_002435_120--Hb_000120_460 Hb_011485_070 Hb_011485_070 Hb_000185_040--Hb_011485_070 Hb_002740_180 Hb_002740_180 Hb_000185_040--Hb_002740_180 Hb_000185_040--Hb_001377_490 Hb_000318_290 Hb_000318_290 Hb_000185_040--Hb_000318_290 Hb_001341_170 Hb_001341_170 Hb_000185_040--Hb_001341_170 Hb_044728_010 Hb_044728_010 Hb_000107_330--Hb_044728_010 Hb_000092_170 Hb_000092_170 Hb_000107_330--Hb_000092_170 Hb_009767_110 Hb_009767_110 Hb_000107_330--Hb_009767_110 Hb_000085_050 Hb_000085_050 Hb_000107_330--Hb_000085_050 Hb_003525_010 Hb_003525_010 Hb_000107_330--Hb_003525_010 Hb_000025_640 Hb_000025_640 Hb_000107_330--Hb_000025_640 Hb_000009_560 Hb_000009_560 Hb_001377_490--Hb_000009_560 Hb_000260_010 Hb_000260_010 Hb_001377_490--Hb_000260_010 Hb_000003_590 Hb_000003_590 Hb_001377_490--Hb_000003_590 Hb_164010_030 Hb_164010_030 Hb_001377_490--Hb_164010_030 Hb_000003_250 Hb_000003_250 Hb_001377_490--Hb_000003_250 Hb_085863_030 Hb_085863_030 Hb_000086_400--Hb_085863_030 Hb_000000_250 Hb_000000_250 Hb_000086_400--Hb_000000_250 Hb_000510_320 Hb_000510_320 Hb_000086_400--Hb_000510_320 Hb_009178_030 Hb_009178_030 Hb_000086_400--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000086_400--Hb_000175_460 Hb_000876_070 Hb_000876_070 Hb_000086_400--Hb_000876_070 Hb_007441_220 Hb_007441_220 Hb_001085_060--Hb_007441_220 Hb_000041_100 Hb_000041_100 Hb_001085_060--Hb_000041_100 Hb_002942_100 Hb_002942_100 Hb_001085_060--Hb_002942_100 Hb_000107_420 Hb_000107_420 Hb_001085_060--Hb_000107_420 Hb_000603_110 Hb_000603_110 Hb_001085_060--Hb_000603_110 Hb_002316_150 Hb_002316_150 Hb_001085_060--Hb_002316_150 Hb_000976_170 Hb_000976_170 Hb_000120_460--Hb_000976_170 Hb_025240_040 Hb_025240_040 Hb_000120_460--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_000120_460--Hb_004218_110 Hb_003697_040 Hb_003697_040 Hb_000120_460--Hb_003697_040 Hb_108350_010 Hb_108350_010 Hb_000120_460--Hb_108350_010 Hb_001545_170 Hb_001545_170 Hb_000120_460--Hb_001545_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.49713 4.10195 1.96919 5.00235 5.73872 6.61805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.10363 7.95902 9.03837 4.98638 4.52936

CAGE analysis