Hb_002445_100

Information

Type -
Description -
Location Contig2445: 153460-168133
Sequence    

Annotation

kegg
ID rcu:RCOM_1316940
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012069334.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
swissprot
ID Q9C551
description DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1
trembl
ID B9RZ31
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1316940 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25506: 153474-167977 , PASA_asmbl_25508: 158210-158403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002445_100 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
2 Hb_000416_110 0.0565281346 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
3 Hb_005779_010 0.0630142704 - - catalytic, putative [Ricinus communis]
4 Hb_000005_220 0.066637458 - - DNA ligase 1, partial [Glycine soja]
5 Hb_000339_040 0.0735155977 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
6 Hb_106552_020 0.075052124 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
7 Hb_002889_010 0.0750899579 - - ubx domain-containing, putative [Ricinus communis]
8 Hb_000866_310 0.0757218304 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
9 Hb_164390_010 0.0768388155 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
10 Hb_000077_320 0.0777714508 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
11 Hb_000189_600 0.0778333761 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
12 Hb_171900_090 0.0778391442 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001225_040 0.078055381 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
14 Hb_000126_010 0.0781016163 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
15 Hb_000789_320 0.0782184013 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
16 Hb_008114_040 0.0786327791 - - Fanconi anemia group D2 [Gossypium arboreum]
17 Hb_002400_340 0.0799626518 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
18 Hb_024958_010 0.0799916493 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
19 Hb_007441_020 0.0809580345 - - Rab6 [Hevea brasiliensis]
20 Hb_001789_060 0.0815927098 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002445_100 Hb_002445_100 Hb_000416_110 Hb_000416_110 Hb_002445_100--Hb_000416_110 Hb_005779_010 Hb_005779_010 Hb_002445_100--Hb_005779_010 Hb_000005_220 Hb_000005_220 Hb_002445_100--Hb_000005_220 Hb_000339_040 Hb_000339_040 Hb_002445_100--Hb_000339_040 Hb_106552_020 Hb_106552_020 Hb_002445_100--Hb_106552_020 Hb_002889_010 Hb_002889_010 Hb_002445_100--Hb_002889_010 Hb_183433_010 Hb_183433_010 Hb_000416_110--Hb_183433_010 Hb_001153_210 Hb_001153_210 Hb_000416_110--Hb_001153_210 Hb_000416_110--Hb_000005_220 Hb_000789_320 Hb_000789_320 Hb_000416_110--Hb_000789_320 Hb_000866_310 Hb_000866_310 Hb_000416_110--Hb_000866_310 Hb_004994_010 Hb_004994_010 Hb_005779_010--Hb_004994_010 Hb_000163_220 Hb_000163_220 Hb_005779_010--Hb_000163_220 Hb_000816_250 Hb_000816_250 Hb_005779_010--Hb_000816_250 Hb_003861_050 Hb_003861_050 Hb_005779_010--Hb_003861_050 Hb_005779_010--Hb_000005_220 Hb_183612_040 Hb_183612_040 Hb_000005_220--Hb_183612_040 Hb_000035_110 Hb_000035_110 Hb_000005_220--Hb_000035_110 Hb_005337_090 Hb_005337_090 Hb_000005_220--Hb_005337_090 Hb_007441_020 Hb_007441_020 Hb_000005_220--Hb_007441_020 Hb_004052_080 Hb_004052_080 Hb_000339_040--Hb_004052_080 Hb_001456_060 Hb_001456_060 Hb_000339_040--Hb_001456_060 Hb_002876_230 Hb_002876_230 Hb_000339_040--Hb_002876_230 Hb_009911_030 Hb_009911_030 Hb_000339_040--Hb_009911_030 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_000339_040--Hb_005867_070 Hb_106552_020--Hb_007441_020 Hb_106552_020--Hb_000163_220 Hb_106552_020--Hb_000005_220 Hb_106552_020--Hb_005779_010 Hb_154580_010 Hb_154580_010 Hb_106552_020--Hb_154580_010 Hb_000731_220 Hb_000731_220 Hb_106552_020--Hb_000731_220 Hb_016777_040 Hb_016777_040 Hb_002889_010--Hb_016777_040 Hb_002889_010--Hb_003861_050 Hb_002471_240 Hb_002471_240 Hb_002889_010--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_002889_010--Hb_001377_310 Hb_002889_010--Hb_000816_250 Hb_000134_270 Hb_000134_270 Hb_002889_010--Hb_000134_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8608 20.4454 28.1878 16.585 12.7401 19.8267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7374 20.3506 11.9576 23.3667 13.9468

CAGE analysis