Hb_002447_020

Information

Type -
Description -
Location Contig2447: 23571-25086
Sequence    

Annotation

kegg
ID rcu:RCOM_0965260
description hypothetical protein
nr
ID XP_002517797.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVM8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0965260 PE=4 SV=1
Gene Ontology
ID GO:0005618
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25516: 23478-25067
cDNA
(Sanger)
(ID:Location)		 002_K02.ab1: 23547-24638 , 003_L23.ab1: 23478-24552 , 005_B03.ab1: 23547-24636 , 009_A15.ab1: 23547-24613 , 051_J16.ab1: 23547-24600

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002447_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_114638_010 0.201744148 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
3 Hb_001097_060 0.2384464088 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
4 Hb_154114_030 0.2399739009 - - amino acid binding protein, putative [Ricinus communis]
5 Hb_003449_060 0.2481366777 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
6 Hb_003740_010 0.2559319876 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003494_010 0.2605766229 - - hypothetical protein JCGZ_19838 [Jatropha curcas]
8 Hb_028486_060 0.2735839273 - - PREDICTED: putative germin-like protein 9-2 [Jatropha curcas]
9 Hb_000853_260 0.2748608946 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
10 Hb_000789_130 0.2888402156 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
11 Hb_002475_120 0.2892952832 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
12 Hb_001195_190 0.2896964892 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000566_080 0.2930921586 - - -
14 Hb_091761_010 0.2964856773 - - Rhomboid protein, putative [Ricinus communis]
15 Hb_162378_010 0.2965626741 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
16 Hb_000205_150 0.2981707216 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
17 Hb_098315_070 0.2994156216 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
18 Hb_105427_010 0.3031697715 - - -
19 Hb_133605_010 0.3033885175 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_000207_190 0.3053641672 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]

Gene co-expression network

sample Hb_002447_020 Hb_002447_020 Hb_114638_010 Hb_114638_010 Hb_002447_020--Hb_114638_010 Hb_001097_060 Hb_001097_060 Hb_002447_020--Hb_001097_060 Hb_154114_030 Hb_154114_030 Hb_002447_020--Hb_154114_030 Hb_003449_060 Hb_003449_060 Hb_002447_020--Hb_003449_060 Hb_003740_010 Hb_003740_010 Hb_002447_020--Hb_003740_010 Hb_003494_010 Hb_003494_010 Hb_002447_020--Hb_003494_010 Hb_001021_160 Hb_001021_160 Hb_114638_010--Hb_001021_160 Hb_114638_010--Hb_001097_060 Hb_000853_260 Hb_000853_260 Hb_114638_010--Hb_000853_260 Hb_162378_010 Hb_162378_010 Hb_114638_010--Hb_162378_010 Hb_009189_020 Hb_009189_020 Hb_114638_010--Hb_009189_020 Hb_001097_060--Hb_162378_010 Hb_000556_150 Hb_000556_150 Hb_001097_060--Hb_000556_150 Hb_105427_010 Hb_105427_010 Hb_001097_060--Hb_105427_010 Hb_007919_080 Hb_007919_080 Hb_001097_060--Hb_007919_080 Hb_003371_060 Hb_003371_060 Hb_001097_060--Hb_003371_060 Hb_154114_030--Hb_003449_060 Hb_002475_120 Hb_002475_120 Hb_154114_030--Hb_002475_120 Hb_001269_310 Hb_001269_310 Hb_154114_030--Hb_001269_310 Hb_012586_050 Hb_012586_050 Hb_154114_030--Hb_012586_050 Hb_004907_090 Hb_004907_090 Hb_154114_030--Hb_004907_090 Hb_002151_010 Hb_002151_010 Hb_154114_030--Hb_002151_010 Hb_000200_070 Hb_000200_070 Hb_003449_060--Hb_000200_070 Hb_003449_060--Hb_002475_120 Hb_000197_110 Hb_000197_110 Hb_003449_060--Hb_000197_110 Hb_004374_130 Hb_004374_130 Hb_003449_060--Hb_004374_130 Hb_001367_010 Hb_001367_010 Hb_003449_060--Hb_001367_010 Hb_059301_010 Hb_059301_010 Hb_003740_010--Hb_059301_010 Hb_160233_020 Hb_160233_020 Hb_003740_010--Hb_160233_020 Hb_014919_020 Hb_014919_020 Hb_003740_010--Hb_014919_020 Hb_000816_010 Hb_000816_010 Hb_003740_010--Hb_000816_010 Hb_188411_010 Hb_188411_010 Hb_003740_010--Hb_188411_010 Hb_133605_010 Hb_133605_010 Hb_003740_010--Hb_133605_010 Hb_004342_020 Hb_004342_020 Hb_003494_010--Hb_004342_020 Hb_003494_010--Hb_012586_050 Hb_002960_110 Hb_002960_110 Hb_003494_010--Hb_002960_110 Hb_019715_010 Hb_019715_010 Hb_003494_010--Hb_019715_010 Hb_027472_130 Hb_027472_130 Hb_003494_010--Hb_027472_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6632 2.1558 39.9855 43.7781 75.7346 6.4814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.32522 1.12776 5.236 4.6534 3.4945

CAGE analysis