Hb_002447_030

Information

Type -
Description -
Location Contig2447: 25073-28187
Sequence    

Annotation

kegg
ID pop:POPTR_0001s27100g
description POPTRDRAFT_641332; hypothetical protein
nr
ID XP_012065594.1
description PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
swissprot
ID Q9LXD1
description Cytochrome b5 domain-containing protein RLF OS=Arabidopsis thaliana GN=RLF PE=2 SV=1
trembl
ID A0A067L554
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16844 PE=3 SV=1
Gene Ontology
ID GO:0005488
description reduced lateral root formation isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25517: 25145-28244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002447_030 0.0 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
2 Hb_000008_320 0.075818063 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
3 Hb_000045_190 0.0855807992 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
4 Hb_024650_020 0.0912762989 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
5 Hb_000634_050 0.091751359 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
6 Hb_001722_040 0.0940594012 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
7 Hb_000362_210 0.094829701 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
8 Hb_002529_100 0.0985663122 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
9 Hb_000085_200 0.100308119 - - ATP synthase subunit H protein [Hevea brasiliensis]
10 Hb_001711_030 0.1010147467 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
11 Hb_000798_030 0.1013892317 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
12 Hb_000479_180 0.101933928 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000120_750 0.1049590962 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
14 Hb_084849_020 0.1059004527 - - ARF GTPase activator, putative [Ricinus communis]
15 Hb_002749_100 0.106911766 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
16 Hb_001153_080 0.1074627237 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
17 Hb_010344_040 0.1087923156 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
18 Hb_011609_180 0.1089057463 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
19 Hb_004108_230 0.1095128781 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
20 Hb_003050_230 0.1101565938 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002447_030 Hb_002447_030 Hb_000008_320 Hb_000008_320 Hb_002447_030--Hb_000008_320 Hb_000045_190 Hb_000045_190 Hb_002447_030--Hb_000045_190 Hb_024650_020 Hb_024650_020 Hb_002447_030--Hb_024650_020 Hb_000634_050 Hb_000634_050 Hb_002447_030--Hb_000634_050 Hb_001722_040 Hb_001722_040 Hb_002447_030--Hb_001722_040 Hb_000362_210 Hb_000362_210 Hb_002447_030--Hb_000362_210 Hb_002529_100 Hb_002529_100 Hb_000008_320--Hb_002529_100 Hb_000085_200 Hb_000085_200 Hb_000008_320--Hb_000085_200 Hb_000926_290 Hb_000926_290 Hb_000008_320--Hb_000926_290 Hb_000008_320--Hb_001722_040 Hb_003050_230 Hb_003050_230 Hb_000008_320--Hb_003050_230 Hb_000045_190--Hb_000634_050 Hb_000798_030 Hb_000798_030 Hb_000045_190--Hb_000798_030 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_001153_080 Hb_001153_080 Hb_000045_190--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000045_190--Hb_001045_080 Hb_000045_190--Hb_002529_100 Hb_065500_050 Hb_065500_050 Hb_024650_020--Hb_065500_050 Hb_023386_080 Hb_023386_080 Hb_024650_020--Hb_023386_080 Hb_002282_020 Hb_002282_020 Hb_024650_020--Hb_002282_020 Hb_001427_120 Hb_001427_120 Hb_024650_020--Hb_001427_120 Hb_044662_070 Hb_044662_070 Hb_024650_020--Hb_044662_070 Hb_000417_110 Hb_000417_110 Hb_000634_050--Hb_000417_110 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000634_050--Hb_000798_030 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150 Hb_183963_020 Hb_183963_020 Hb_001722_040--Hb_183963_020 Hb_025087_010 Hb_025087_010 Hb_001722_040--Hb_025087_010 Hb_001999_120 Hb_001999_120 Hb_001722_040--Hb_001999_120 Hb_001366_230 Hb_001366_230 Hb_001722_040--Hb_001366_230 Hb_003038_180 Hb_003038_180 Hb_001722_040--Hb_003038_180 Hb_002660_160 Hb_002660_160 Hb_000362_210--Hb_002660_160 Hb_007021_020 Hb_007021_020 Hb_000362_210--Hb_007021_020 Hb_084849_020 Hb_084849_020 Hb_000362_210--Hb_084849_020 Hb_010172_030 Hb_010172_030 Hb_000362_210--Hb_010172_030 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000362_210--Hb_000634_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.55 10.582 17.6634 24.3597 63.3271 71.2453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.643 123.806 76.5577 13.3524 9.70535

CAGE analysis