Hb_002447_040

Information

Type -
Description -
Location Contig2447: 33401-38135
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06360g
description POPTRDRAFT_1087868; S-adenosyl-methionine-sterol-C- methyltransferase family protein
nr
ID KHG15107.1
description Cycloartenol-C-24-methyltransferase -like protein [Gossypium arboreum]
swissprot
ID Q9LM02
description Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=1 SV=1
trembl
ID A0A0B0NR21
description Cycloartenol-C-24-methyltransferase-like protein OS=Gossypium arboreum GN=F383_19071 PE=4 SV=1
Gene Ontology
ID GO:0008168
description cycloartenol-c-24-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25518: 33154-38978
cDNA
(Sanger)
(ID:Location)		 001_M06.ab1: 33154-37357 , 008_O19.ab1: 33154-37058

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002447_040 0.0 - - Cycloartenol-C-24-methyltransferase -like protein [Gossypium arboreum]
2 Hb_000270_630 0.1039951498 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
3 Hb_001769_080 0.1169287459 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
4 Hb_002374_020 0.1220151917 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
5 Hb_011671_040 0.1248755895 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
6 Hb_000299_040 0.1326867986 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
7 Hb_002671_100 0.1339486642 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
8 Hb_008120_010 0.1361015741 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
9 Hb_001689_020 0.1363390634 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
10 Hb_158062_010 0.1373031905 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
11 Hb_005016_170 0.1376006962 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000445_050 0.1398859369 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
13 Hb_123954_010 0.1417848118 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
14 Hb_003502_080 0.1419294021 - - vacuolar protein sorting, putative [Ricinus communis]
15 Hb_041392_010 0.1444164863 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
16 Hb_000260_170 0.1455488103 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
17 Hb_009775_050 0.145845691 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
18 Hb_002272_180 0.1459522887 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
19 Hb_009049_020 0.1460655076 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
20 Hb_001341_120 0.1461335058 - - hypothetical protein B456_001G130300 [Gossypium raimondii]

Gene co-expression network

sample Hb_002447_040 Hb_002447_040 Hb_000270_630 Hb_000270_630 Hb_002447_040--Hb_000270_630 Hb_001769_080 Hb_001769_080 Hb_002447_040--Hb_001769_080 Hb_002374_020 Hb_002374_020 Hb_002447_040--Hb_002374_020 Hb_011671_040 Hb_011671_040 Hb_002447_040--Hb_011671_040 Hb_000299_040 Hb_000299_040 Hb_002447_040--Hb_000299_040 Hb_002671_100 Hb_002671_100 Hb_002447_040--Hb_002671_100 Hb_000523_050 Hb_000523_050 Hb_000270_630--Hb_000523_050 Hb_002946_160 Hb_002946_160 Hb_000270_630--Hb_002946_160 Hb_000009_480 Hb_000009_480 Hb_000270_630--Hb_000009_480 Hb_103012_010 Hb_103012_010 Hb_000270_630--Hb_103012_010 Hb_003813_130 Hb_003813_130 Hb_000270_630--Hb_003813_130 Hb_040262_010 Hb_040262_010 Hb_000270_630--Hb_040262_010 Hb_001025_110 Hb_001025_110 Hb_001769_080--Hb_001025_110 Hb_158062_010 Hb_158062_010 Hb_001769_080--Hb_158062_010 Hb_001454_400 Hb_001454_400 Hb_001769_080--Hb_001454_400 Hb_140291_010 Hb_140291_010 Hb_001769_080--Hb_140291_010 Hb_001769_080--Hb_000270_630 Hb_002374_020--Hb_002671_100 Hb_004934_070 Hb_004934_070 Hb_002374_020--Hb_004934_070 Hb_144598_030 Hb_144598_030 Hb_002374_020--Hb_144598_030 Hb_001935_130 Hb_001935_130 Hb_002374_020--Hb_001935_130 Hb_005016_170 Hb_005016_170 Hb_002374_020--Hb_005016_170 Hb_005862_010 Hb_005862_010 Hb_002374_020--Hb_005862_010 Hb_000025_470 Hb_000025_470 Hb_011671_040--Hb_000025_470 Hb_008748_040 Hb_008748_040 Hb_011671_040--Hb_008748_040 Hb_008120_010 Hb_008120_010 Hb_011671_040--Hb_008120_010 Hb_004127_030 Hb_004127_030 Hb_011671_040--Hb_004127_030 Hb_000270_490 Hb_000270_490 Hb_011671_040--Hb_000270_490 Hb_003688_130 Hb_003688_130 Hb_011671_040--Hb_003688_130 Hb_001252_100 Hb_001252_100 Hb_000299_040--Hb_001252_100 Hb_000010_090 Hb_000010_090 Hb_000299_040--Hb_000010_090 Hb_000529_160 Hb_000529_160 Hb_000299_040--Hb_000529_160 Hb_000053_130 Hb_000053_130 Hb_000299_040--Hb_000053_130 Hb_033843_010 Hb_033843_010 Hb_000299_040--Hb_033843_010 Hb_000883_130 Hb_000883_130 Hb_000299_040--Hb_000883_130 Hb_007594_130 Hb_007594_130 Hb_002671_100--Hb_007594_130 Hb_002671_100--Hb_040262_010 Hb_004881_020 Hb_004881_020 Hb_002671_100--Hb_004881_020 Hb_002671_100--Hb_144598_030 Hb_004117_130 Hb_004117_130 Hb_002671_100--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_002671_100--Hb_000260_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2836 3.05219 16.8157 22.6732 20.7435 31.6117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3652 11.5506 9.04741 16.8602 3.97469

CAGE analysis