Hb_002447_080

Information

Type -
Description -
Location Contig2447: 80884-88579
Sequence    

Annotation

kegg
ID rcu:RCOM_0964760
description Angio-associated migratory cell protein, putative (EC:2.7.11.7)
nr
ID XP_002517787.1
description Angio-associated migratory cell protein, putative [Ricinus communis]
swissprot
ID Q9FLX9
description Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1
trembl
ID B9RVL8
description Angio-associated migratory cell protein, putative OS=Ricinus communis GN=RCOM_0964760 PE=4 SV=1
Gene Ontology
ID GO:0005634
description notchless protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25529: 81542-88537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002447_080 0.0 - - Angio-associated migratory cell protein, putative [Ricinus communis]
2 Hb_003020_280 0.1109572589 - - hypothetical protein PRUPE_ppa026521mg [Prunus persica]
3 Hb_005488_020 0.1280092191 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
4 Hb_000071_170 0.1356942539 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
5 Hb_003994_120 0.1378995789 - - PREDICTED: uncharacterized protein LOC105130433 isoform X1 [Populus euphratica]
6 Hb_005054_230 0.1386623705 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
7 Hb_004450_040 0.138931162 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
8 Hb_000053_020 0.1391112927 - - F-box and wd40 domain protein, putative [Ricinus communis]
9 Hb_002301_150 0.1426303499 - - Drought-responsive family protein [Theobroma cacao]
10 Hb_002600_090 0.1433821957 - - ATP binding protein, putative [Ricinus communis]
11 Hb_009486_140 0.1436523075 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
12 Hb_006846_130 0.1462307525 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
13 Hb_006637_070 0.1475829339 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
14 Hb_000210_250 0.1477189993 - - PREDICTED: testis-expressed sequence 10 protein isoform X1 [Jatropha curcas]
15 Hb_001629_080 0.1477847299 - - hypothetical protein POPTR_0011s12610g [Populus trichocarpa]
16 Hb_000035_500 0.1481399424 - - PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]
17 Hb_002107_030 0.1482388321 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
18 Hb_000009_660 0.1484453192 - - -
19 Hb_006913_030 0.1486215793 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
20 Hb_003768_030 0.1498802436 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002447_080 Hb_002447_080 Hb_003020_280 Hb_003020_280 Hb_002447_080--Hb_003020_280 Hb_005488_020 Hb_005488_020 Hb_002447_080--Hb_005488_020 Hb_000071_170 Hb_000071_170 Hb_002447_080--Hb_000071_170 Hb_003994_120 Hb_003994_120 Hb_002447_080--Hb_003994_120 Hb_005054_230 Hb_005054_230 Hb_002447_080--Hb_005054_230 Hb_004450_040 Hb_004450_040 Hb_002447_080--Hb_004450_040 Hb_000538_160 Hb_000538_160 Hb_003020_280--Hb_000538_160 Hb_006913_030 Hb_006913_030 Hb_003020_280--Hb_006913_030 Hb_002107_030 Hb_002107_030 Hb_003020_280--Hb_002107_030 Hb_003020_280--Hb_005054_230 Hb_000462_170 Hb_000462_170 Hb_003020_280--Hb_000462_170 Hb_003294_070 Hb_003294_070 Hb_003020_280--Hb_003294_070 Hb_000869_020 Hb_000869_020 Hb_005488_020--Hb_000869_020 Hb_000816_250 Hb_000816_250 Hb_005488_020--Hb_000816_250 Hb_000140_290 Hb_000140_290 Hb_005488_020--Hb_000140_290 Hb_001584_140 Hb_001584_140 Hb_005488_020--Hb_001584_140 Hb_023344_120 Hb_023344_120 Hb_005488_020--Hb_023344_120 Hb_000637_150 Hb_000637_150 Hb_005488_020--Hb_000637_150 Hb_000210_250 Hb_000210_250 Hb_000071_170--Hb_000210_250 Hb_005539_340 Hb_005539_340 Hb_000071_170--Hb_005539_340 Hb_002007_150 Hb_002007_150 Hb_000071_170--Hb_002007_150 Hb_002820_030 Hb_002820_030 Hb_000071_170--Hb_002820_030 Hb_006502_060 Hb_006502_060 Hb_000071_170--Hb_006502_060 Hb_006637_070 Hb_006637_070 Hb_003994_120--Hb_006637_070 Hb_004586_420 Hb_004586_420 Hb_003994_120--Hb_004586_420 Hb_023001_040 Hb_023001_040 Hb_003994_120--Hb_023001_040 Hb_005914_170 Hb_005914_170 Hb_003994_120--Hb_005914_170 Hb_003058_120 Hb_003058_120 Hb_003994_120--Hb_003058_120 Hb_006452_100 Hb_006452_100 Hb_003994_120--Hb_006452_100 Hb_005054_230--Hb_002107_030 Hb_001369_730 Hb_001369_730 Hb_005054_230--Hb_001369_730 Hb_000930_030 Hb_000930_030 Hb_005054_230--Hb_000930_030 Hb_000009_090 Hb_000009_090 Hb_005054_230--Hb_000009_090 Hb_002890_290 Hb_002890_290 Hb_005054_230--Hb_002890_290 Hb_005116_160 Hb_005116_160 Hb_005054_230--Hb_005116_160 Hb_000075_040 Hb_000075_040 Hb_004450_040--Hb_000075_040 Hb_004450_040--Hb_000462_170 Hb_001946_400 Hb_001946_400 Hb_004450_040--Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_004450_040--Hb_001021_150 Hb_001301_150 Hb_001301_150 Hb_004450_040--Hb_001301_150 Hb_000708_030 Hb_000708_030 Hb_004450_040--Hb_000708_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1561 7.05796 7.71277 8.46625 5.05663 3.96236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9462 13.6823 8.36058 12.9942 12.6251

CAGE analysis