Hb_002447_130

Information

Type -
Description -
Location Contig2447: 110411-111748
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25530: 109558-109690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002447_130 0.0 - - -
2 Hb_006360_030 0.1573380605 - - -
3 Hb_006694_020 0.1611488097 - - PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
4 Hb_001476_070 0.1748133518 - - MinE protein [Manihot esculenta]
5 Hb_029510_020 0.1794670006 - - hypothetical protein JCGZ_06306 [Jatropha curcas]
6 Hb_000265_240 0.1841904491 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
7 Hb_000377_070 0.1847069603 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 [Jatropha curcas]
8 Hb_111844_010 0.1847502622 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
9 Hb_001097_100 0.1860548836 - - Chaperone DnaJ-domain superfamily protein [Theobroma cacao]
10 Hb_000679_050 0.1955389462 - - Alba DNA/RNA-binding protein [Theobroma cacao]
11 Hb_002338_060 0.1962338386 - - 2Fe-2S ferredoxin [Glycine soja]
12 Hb_000679_300 0.1967414446 - - PREDICTED: uncharacterized protein LOC105637628 isoform X2 [Jatropha curcas]
13 Hb_001712_070 0.2001820159 - - PREDICTED: HD domain-containing protein 2 [Jatropha curcas]
14 Hb_000562_030 0.2007290922 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001902_130 0.202083994 - - 60S ribosomal protein L36-2 [Morus notabilis]
16 Hb_001234_080 0.2022603775 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
17 Hb_024505_020 0.204342637 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
18 Hb_002784_080 0.2047786644 - - PREDICTED: DNA replication complex GINS protein PSF3-like [Jatropha curcas]
19 Hb_019516_020 0.2050242789 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001221_320 0.2050533653 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002447_130 Hb_002447_130 Hb_006360_030 Hb_006360_030 Hb_002447_130--Hb_006360_030 Hb_006694_020 Hb_006694_020 Hb_002447_130--Hb_006694_020 Hb_001476_070 Hb_001476_070 Hb_002447_130--Hb_001476_070 Hb_029510_020 Hb_029510_020 Hb_002447_130--Hb_029510_020 Hb_000265_240 Hb_000265_240 Hb_002447_130--Hb_000265_240 Hb_000377_070 Hb_000377_070 Hb_002447_130--Hb_000377_070 Hb_002783_270 Hb_002783_270 Hb_006360_030--Hb_002783_270 Hb_004096_090 Hb_004096_090 Hb_006360_030--Hb_004096_090 Hb_021419_020 Hb_021419_020 Hb_006360_030--Hb_021419_020 Hb_001341_090 Hb_001341_090 Hb_006360_030--Hb_001341_090 Hb_005054_060 Hb_005054_060 Hb_006360_030--Hb_005054_060 Hb_000690_190 Hb_000690_190 Hb_006360_030--Hb_000690_190 Hb_004837_030 Hb_004837_030 Hb_006694_020--Hb_004837_030 Hb_000030_180 Hb_000030_180 Hb_006694_020--Hb_000030_180 Hb_007763_040 Hb_007763_040 Hb_006694_020--Hb_007763_040 Hb_001234_080 Hb_001234_080 Hb_006694_020--Hb_001234_080 Hb_000679_050 Hb_000679_050 Hb_006694_020--Hb_000679_050 Hb_009694_010 Hb_009694_010 Hb_006694_020--Hb_009694_010 Hb_002477_300 Hb_002477_300 Hb_001476_070--Hb_002477_300 Hb_004934_030 Hb_004934_030 Hb_001476_070--Hb_004934_030 Hb_001998_120 Hb_001998_120 Hb_001476_070--Hb_001998_120 Hb_004449_170 Hb_004449_170 Hb_001476_070--Hb_004449_170 Hb_146673_010 Hb_146673_010 Hb_001476_070--Hb_146673_010 Hb_001476_070--Hb_006360_030 Hb_003185_110 Hb_003185_110 Hb_029510_020--Hb_003185_110 Hb_029510_020--Hb_002783_270 Hb_005773_060 Hb_005773_060 Hb_029510_020--Hb_005773_060 Hb_029510_020--Hb_004934_030 Hb_029510_020--Hb_001476_070 Hb_002900_160 Hb_002900_160 Hb_029510_020--Hb_002900_160 Hb_001329_290 Hb_001329_290 Hb_000265_240--Hb_001329_290 Hb_001564_130 Hb_001564_130 Hb_000265_240--Hb_001564_130 Hb_000265_240--Hb_004449_170 Hb_000265_240--Hb_000377_070 Hb_030565_080 Hb_030565_080 Hb_000265_240--Hb_030565_080 Hb_003292_040 Hb_003292_040 Hb_000265_240--Hb_003292_040 Hb_005731_050 Hb_005731_050 Hb_000377_070--Hb_005731_050 Hb_002784_080 Hb_002784_080 Hb_000377_070--Hb_002784_080 Hb_002338_060 Hb_002338_060 Hb_000377_070--Hb_002338_060 Hb_000377_070--Hb_001234_080 Hb_001635_180 Hb_001635_180 Hb_000377_070--Hb_001635_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.81602 0.0389275 1.43586 1.18282 1.69413 0.854821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06522 2.17647 0.145614 0.206432 0.644187

CAGE analysis