Hb_002447_160

Information

Type -
Description -
Location Contig2447: 144273-148482
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005634
description notchless protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25534: 144205-144698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002447_160 0.0 - - -
2 Hb_003768_060 0.2047405367 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
3 Hb_001004_050 0.2077943707 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
4 Hb_002631_220 0.2374864568 - - Patellin-4, putative [Ricinus communis]
5 Hb_059481_010 0.2562372402 - - hypothetical protein POPTR_0008s06860g [Populus trichocarpa]
6 Hb_000787_010 0.2639185925 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
7 Hb_004021_090 0.2712363371 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
8 Hb_001711_010 0.2719590847 - - -
9 Hb_009979_010 0.2745909802 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_001486_210 0.2841629903 - - -
11 Hb_005883_070 0.2922362723 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
12 Hb_028639_040 0.2941554641 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
13 Hb_096473_010 0.2943428994 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
14 Hb_095575_010 0.2958475213 - - hypothetical protein JCGZ_19529 [Jatropha curcas]
15 Hb_183192_010 0.3008170106 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
16 Hb_171062_010 0.3012532613 - - hypothetical protein VITISV_036059 [Vitis vinifera]
17 Hb_186589_010 0.302696753 - - PREDICTED: developmentally-regulated G-protein 3 [Nelumbo nucifera]
18 Hb_007163_080 0.3071606159 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
19 Hb_010423_010 0.3082730747 - - -
20 Hb_008020_020 0.3088521473 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002447_160 Hb_002447_160 Hb_003768_060 Hb_003768_060 Hb_002447_160--Hb_003768_060 Hb_001004_050 Hb_001004_050 Hb_002447_160--Hb_001004_050 Hb_002631_220 Hb_002631_220 Hb_002447_160--Hb_002631_220 Hb_059481_010 Hb_059481_010 Hb_002447_160--Hb_059481_010 Hb_000787_010 Hb_000787_010 Hb_002447_160--Hb_000787_010 Hb_004021_090 Hb_004021_090 Hb_002447_160--Hb_004021_090 Hb_003768_060--Hb_000787_010 Hb_028639_040 Hb_028639_040 Hb_003768_060--Hb_028639_040 Hb_158384_010 Hb_158384_010 Hb_003768_060--Hb_158384_010 Hb_003768_060--Hb_004021_090 Hb_099990_030 Hb_099990_030 Hb_003768_060--Hb_099990_030 Hb_009979_010 Hb_009979_010 Hb_001004_050--Hb_009979_010 Hb_183192_010 Hb_183192_010 Hb_001004_050--Hb_183192_010 Hb_001141_200 Hb_001141_200 Hb_001004_050--Hb_001141_200 Hb_001004_050--Hb_004021_090 Hb_096473_010 Hb_096473_010 Hb_001004_050--Hb_096473_010 Hb_001214_150 Hb_001214_150 Hb_002631_220--Hb_001214_150 Hb_004945_020 Hb_004945_020 Hb_002631_220--Hb_004945_020 Hb_089140_010 Hb_089140_010 Hb_002631_220--Hb_089140_010 Hb_007592_020 Hb_007592_020 Hb_002631_220--Hb_007592_020 Hb_126648_010 Hb_126648_010 Hb_002631_220--Hb_126648_010 Hb_002874_210 Hb_002874_210 Hb_059481_010--Hb_002874_210 Hb_001007_090 Hb_001007_090 Hb_059481_010--Hb_001007_090 Hb_005694_070 Hb_005694_070 Hb_059481_010--Hb_005694_070 Hb_123475_020 Hb_123475_020 Hb_059481_010--Hb_123475_020 Hb_000042_020 Hb_000042_020 Hb_059481_010--Hb_000042_020 Hb_000787_010--Hb_099990_030 Hb_000787_010--Hb_004021_090 Hb_000787_010--Hb_028639_040 Hb_000589_370 Hb_000589_370 Hb_000787_010--Hb_000589_370 Hb_002235_180 Hb_002235_180 Hb_000787_010--Hb_002235_180 Hb_004021_090--Hb_009979_010 Hb_001486_210 Hb_001486_210 Hb_004021_090--Hb_001486_210 Hb_004021_090--Hb_028639_040 Hb_004021_090--Hb_183192_010 Hb_115513_030 Hb_115513_030 Hb_004021_090--Hb_115513_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137686 0.193838 0.271653 0.0685042 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.049766 0 0.0402214 0

CAGE analysis