Hb_002450_020

Information

Type -
Description -
Location Contig2450: 13201-20067
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13680g
description hypothetical protein
nr
ID XP_012090306.1
description PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
swissprot
ID F4JT98
description Probable transcriptional regulator SLK3 OS=Arabidopsis thaliana GN=SLK3 PE=3 SV=1
trembl
ID A0A067JEL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26152 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable transcriptional regulator slk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25554: 13223-20043 , PASA_asmbl_25555: 16659-17180 , PASA_asmbl_25556: 17763-18128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_020 0.0 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
2 Hb_000041_100 0.0534096648 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
3 Hb_011386_010 0.0605033312 - - mitochondrial carrier protein, putative [Ricinus communis]
4 Hb_000297_010 0.0632087392 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
5 Hb_005054_110 0.0638309848 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
6 Hb_015934_040 0.0670052833 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
7 Hb_001014_030 0.0673572016 - - ATP binding protein, putative [Ricinus communis]
8 Hb_003371_090 0.0681132769 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
9 Hb_019863_070 0.069118742 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
10 Hb_000614_250 0.0701948453 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
11 Hb_002620_020 0.0703802229 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
12 Hb_000710_060 0.0704457037 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
13 Hb_065525_040 0.0736796771 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
14 Hb_001799_180 0.0744571791 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
15 Hb_001205_240 0.0744673341 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
16 Hb_000049_210 0.0750759603 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
17 Hb_003680_120 0.0755498161 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
18 Hb_002818_030 0.0768617688 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
19 Hb_001377_490 0.076915808 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
20 Hb_000856_010 0.0773458437 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]

Gene co-expression network

sample Hb_002450_020 Hb_002450_020 Hb_000041_100 Hb_000041_100 Hb_002450_020--Hb_000041_100 Hb_011386_010 Hb_011386_010 Hb_002450_020--Hb_011386_010 Hb_000297_010 Hb_000297_010 Hb_002450_020--Hb_000297_010 Hb_005054_110 Hb_005054_110 Hb_002450_020--Hb_005054_110 Hb_015934_040 Hb_015934_040 Hb_002450_020--Hb_015934_040 Hb_001014_030 Hb_001014_030 Hb_002450_020--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_000041_100--Hb_003371_090 Hb_000041_100--Hb_000297_010 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_000041_100--Hb_011386_010 Hb_011386_010--Hb_005054_110 Hb_002078_350 Hb_002078_350 Hb_011386_010--Hb_002078_350 Hb_000329_710 Hb_000329_710 Hb_011386_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_011386_010--Hb_002518_260 Hb_156279_020 Hb_156279_020 Hb_011386_010--Hb_156279_020 Hb_000792_010 Hb_000792_010 Hb_011386_010--Hb_000792_010 Hb_000185_030 Hb_000185_030 Hb_000297_010--Hb_000185_030 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000840_250 Hb_000840_250 Hb_000297_010--Hb_000840_250 Hb_000049_210 Hb_000049_210 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_149985_010 Hb_149985_010 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110 Hb_010618_010 Hb_010618_010 Hb_015934_040--Hb_010618_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_000032_520 Hb_000032_520 Hb_015934_040--Hb_000032_520 Hb_001248_060 Hb_001248_060 Hb_015934_040--Hb_001248_060 Hb_000003_250 Hb_000003_250 Hb_001014_030--Hb_000003_250 Hb_001014_030--Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_001014_030--Hb_001633_210 Hb_000614_250 Hb_000614_250 Hb_001014_030--Hb_000614_250 Hb_001014_030--Hb_000297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3216 31.7015 17.2634 26.2333 17.1805 28.545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.205 31.1414 39.0809 22.4842 27.1191

CAGE analysis