Hb_002450_040

Information

Type -
Description -
Location Contig2450: 26875-29918
Sequence    

Annotation

kegg
ID vvi:100243758
description DNA-directed RNA polymerases II and V subunit 6B
nr
ID XP_002282723.1
description PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
swissprot
ID Q9FJ98
description DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana GN=NRPB6A PE=1 SV=1
trembl
ID E0CTZ1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01210 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25562: 26883-28950 , PASA_asmbl_25563: 26883-28902 , PASA_asmbl_25564: 28203-28723 , PASA_asmbl_25565: 29161-29942
cDNA
(Sanger)
(ID:Location)		 038_A08.ab1: 29184-29942

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_040 0.0 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
2 Hb_001377_030 0.1167515731 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
3 Hb_000926_180 0.120423864 - - proline synthetase associated protein, putative [Ricinus communis]
4 Hb_007313_090 0.1252819536 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001373_110 0.1288673952 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
6 Hb_000297_110 0.1302244884 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
7 Hb_000976_260 0.1317043079 - - -
8 Hb_011013_010 0.1377742205 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
9 Hb_002639_150 0.1384828009 - - -
10 Hb_000661_140 0.1386584166 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
11 Hb_022132_010 0.1406443966 - - unknown [Medicago truncatula]
12 Hb_000012_020 0.1420421926 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
13 Hb_000836_430 0.1429342464 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
14 Hb_140833_010 0.1457765566 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
15 Hb_005085_020 0.1476186448 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
16 Hb_001142_050 0.1489958402 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
17 Hb_001195_260 0.1499352907 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
18 Hb_000390_310 0.1515155506 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
19 Hb_003994_140 0.1518880166 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004128_200 0.1522285308 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]

Gene co-expression network

sample Hb_002450_040 Hb_002450_040 Hb_001377_030 Hb_001377_030 Hb_002450_040--Hb_001377_030 Hb_000926_180 Hb_000926_180 Hb_002450_040--Hb_000926_180 Hb_007313_090 Hb_007313_090 Hb_002450_040--Hb_007313_090 Hb_001373_110 Hb_001373_110 Hb_002450_040--Hb_001373_110 Hb_000297_110 Hb_000297_110 Hb_002450_040--Hb_000297_110 Hb_000976_260 Hb_000976_260 Hb_002450_040--Hb_000976_260 Hb_003050_110 Hb_003050_110 Hb_001377_030--Hb_003050_110 Hb_000000_360 Hb_000000_360 Hb_001377_030--Hb_000000_360 Hb_140833_010 Hb_140833_010 Hb_001377_030--Hb_140833_010 Hb_004934_030 Hb_004934_030 Hb_001377_030--Hb_004934_030 Hb_000260_800 Hb_000260_800 Hb_001377_030--Hb_000260_800 Hb_000926_180--Hb_007313_090 Hb_001269_640 Hb_001269_640 Hb_000926_180--Hb_001269_640 Hb_027043_020 Hb_027043_020 Hb_000926_180--Hb_027043_020 Hb_004785_190 Hb_004785_190 Hb_000926_180--Hb_004785_190 Hb_002639_150 Hb_002639_150 Hb_000926_180--Hb_002639_150 Hb_001427_050 Hb_001427_050 Hb_000926_180--Hb_001427_050 Hb_000576_050 Hb_000576_050 Hb_007313_090--Hb_000576_050 Hb_000836_170 Hb_000836_170 Hb_007313_090--Hb_000836_170 Hb_007313_090--Hb_004785_190 Hb_058972_010 Hb_058972_010 Hb_007313_090--Hb_058972_010 Hb_007313_090--Hb_027043_020 Hb_001373_110--Hb_140833_010 Hb_011013_010 Hb_011013_010 Hb_001373_110--Hb_011013_010 Hb_000661_140 Hb_000661_140 Hb_001373_110--Hb_000661_140 Hb_001373_110--Hb_000976_260 Hb_000012_020 Hb_000012_020 Hb_001373_110--Hb_000012_020 Hb_000676_050 Hb_000676_050 Hb_000297_110--Hb_000676_050 Hb_010968_010 Hb_010968_010 Hb_000297_110--Hb_010968_010 Hb_000297_110--Hb_002639_150 Hb_001160_120 Hb_001160_120 Hb_000297_110--Hb_001160_120 Hb_001040_040 Hb_001040_040 Hb_000297_110--Hb_001040_040 Hb_000789_100 Hb_000789_100 Hb_000297_110--Hb_000789_100 Hb_001142_050 Hb_001142_050 Hb_000976_260--Hb_001142_050 Hb_000976_260--Hb_000012_020 Hb_004363_010 Hb_004363_010 Hb_000976_260--Hb_004363_010 Hb_000261_250 Hb_000261_250 Hb_000976_260--Hb_000261_250 Hb_000976_260--Hb_000661_140 Hb_000976_260--Hb_002639_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7104 10.2973 56.1455 12.5068 34.8229 32.0833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6168 19.6743 9.62101 5.25734 5.78919

CAGE analysis