Hb_002450_110

Information

Type -
Description -
Location Contig2450: 77140-78287
Sequence    

Annotation

kegg
ID bvg:104884633
description geraniol 8-hydroxylase-like
nr
ID XP_010667620.1
description PREDICTED: geraniol 8-hydroxylase-like [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID M4DD91
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra014459 PE=4 SV=1
Gene Ontology
ID GO:0005506
description probable -n-methylcoclaurine 3 -hydroxylase isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25568: 78313-79609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_110 0.0 - - PREDICTED: geraniol 8-hydroxylase-like [Beta vulgaris subsp. vulgaris]
2 Hb_000544_040 0.2135581171 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
3 Hb_000099_220 0.2138421598 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_001916_130 0.2233856545 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
5 Hb_095471_010 0.2260079387 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
6 Hb_007547_040 0.2296933442 - - Auxin response factor 9 [Aegilops tauschii]
7 Hb_000313_320 0.2323850981 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
8 Hb_105427_010 0.2324645838 - - -
9 Hb_007765_060 0.2347854758 - - Proliferating cell nuclear antigen [Theobroma cacao]
10 Hb_000012_150 0.2375929811 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
11 Hb_000590_030 0.2376051262 - - conserved hypothetical protein [Ricinus communis]
12 Hb_104812_030 0.2377996755 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
13 Hb_005725_070 0.2428232845 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000590_080 0.2433077248 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
15 Hb_031862_170 0.243732499 - - immunophilin, putative [Ricinus communis]
16 Hb_000692_170 0.2483647818 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
17 Hb_003768_040 0.2497027881 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_000329_050 0.2509338305 - - -
19 Hb_000364_180 0.2516321825 - - PREDICTED: PI-PLC X domain-containing protein At5g67130 [Jatropha curcas]
20 Hb_019936_010 0.2524505879 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]

Gene co-expression network

sample Hb_002450_110 Hb_002450_110 Hb_000544_040 Hb_000544_040 Hb_002450_110--Hb_000544_040 Hb_000099_220 Hb_000099_220 Hb_002450_110--Hb_000099_220 Hb_001916_130 Hb_001916_130 Hb_002450_110--Hb_001916_130 Hb_095471_010 Hb_095471_010 Hb_002450_110--Hb_095471_010 Hb_007547_040 Hb_007547_040 Hb_002450_110--Hb_007547_040 Hb_000313_320 Hb_000313_320 Hb_002450_110--Hb_000313_320 Hb_000849_150 Hb_000849_150 Hb_000544_040--Hb_000849_150 Hb_005725_070 Hb_005725_070 Hb_000544_040--Hb_005725_070 Hb_007305_010 Hb_007305_010 Hb_000544_040--Hb_007305_010 Hb_000300_540 Hb_000300_540 Hb_000544_040--Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000544_040--Hb_007786_010 Hb_000173_370 Hb_000173_370 Hb_000544_040--Hb_000173_370 Hb_003768_040 Hb_003768_040 Hb_000099_220--Hb_003768_040 Hb_000857_050 Hb_000857_050 Hb_000099_220--Hb_000857_050 Hb_000590_030 Hb_000590_030 Hb_000099_220--Hb_000590_030 Hb_064885_020 Hb_064885_020 Hb_000099_220--Hb_064885_020 Hb_104812_030 Hb_104812_030 Hb_000099_220--Hb_104812_030 Hb_000376_110 Hb_000376_110 Hb_001916_130--Hb_000376_110 Hb_000641_030 Hb_000641_030 Hb_001916_130--Hb_000641_030 Hb_002078_040 Hb_002078_040 Hb_001916_130--Hb_002078_040 Hb_000056_120 Hb_000056_120 Hb_001916_130--Hb_000056_120 Hb_003304_080 Hb_003304_080 Hb_001916_130--Hb_003304_080 Hb_007810_040 Hb_007810_040 Hb_001916_130--Hb_007810_040 Hb_095471_010--Hb_000313_320 Hb_129067_010 Hb_129067_010 Hb_095471_010--Hb_129067_010 Hb_000365_260 Hb_000365_260 Hb_095471_010--Hb_000365_260 Hb_000465_120 Hb_000465_120 Hb_095471_010--Hb_000465_120 Hb_000815_100 Hb_000815_100 Hb_095471_010--Hb_000815_100 Hb_032264_130 Hb_032264_130 Hb_095471_010--Hb_032264_130 Hb_105427_010 Hb_105427_010 Hb_007547_040--Hb_105427_010 Hb_007547_040--Hb_104812_030 Hb_007547_040--Hb_000099_220 Hb_007765_060 Hb_007765_060 Hb_007547_040--Hb_007765_060 Hb_007547_040--Hb_000544_040 Hb_000186_100 Hb_000186_100 Hb_000313_320--Hb_000186_100 Hb_000101_180 Hb_000101_180 Hb_000313_320--Hb_000101_180 Hb_000258_150 Hb_000258_150 Hb_000313_320--Hb_000258_150 Hb_123104_010 Hb_123104_010 Hb_000313_320--Hb_123104_010 Hb_002388_060 Hb_002388_060 Hb_000313_320--Hb_002388_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7137 2.23729 1.11268 4.94202 17.6627 2.95281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.8753 0.996584 7.21092 2.12559 0.314351

CAGE analysis