Hb_002450_130

Information

Type -
Description -
Location Contig2450: 86374-87345
Sequence    

Annotation

kegg
ID rcu:RCOM_0572760
description histidine kinase 1 plant, putative (EC:2.7.13.3)
nr
ID KDP46777.1
description hypothetical protein JCGZ_06565 [Jatropha curcas]
swissprot
ID Q9SXL4
description Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2
trembl
ID A0A067LEH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06565 PE=4 SV=1
Gene Ontology
ID GO:0005622
description histidine kinase 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_130 0.0 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
2 Hb_008096_020 0.1365917048 - - -
3 Hb_000291_130 0.1428008635 - - -
4 Hb_000876_010 0.1546765159 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
5 Hb_002972_060 0.1558268772 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
6 Hb_005723_070 0.1613763646 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
7 Hb_000130_170 0.1716311922 - - -
8 Hb_000340_330 0.1774920729 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
9 Hb_103093_010 0.1807057058 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
10 Hb_122567_020 0.1985277922 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
11 Hb_021943_070 0.2015524833 - - -
12 Hb_094132_010 0.2075603947 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
13 Hb_000683_090 0.2113649972 - - stress enhanced protein [Medicago truncatula]
14 Hb_005318_010 0.2133806646 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
15 Hb_000084_130 0.2155655091 - - -
16 Hb_000671_040 0.218154783 - - -
17 Hb_002204_040 0.2185905438 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
18 Hb_000193_030 0.2198547828 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
19 Hb_006995_010 0.2224561052 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
20 Hb_163132_010 0.2229720885 - - -

Gene co-expression network

sample Hb_002450_130 Hb_002450_130 Hb_008096_020 Hb_008096_020 Hb_002450_130--Hb_008096_020 Hb_000291_130 Hb_000291_130 Hb_002450_130--Hb_000291_130 Hb_000876_010 Hb_000876_010 Hb_002450_130--Hb_000876_010 Hb_002972_060 Hb_002972_060 Hb_002450_130--Hb_002972_060 Hb_005723_070 Hb_005723_070 Hb_002450_130--Hb_005723_070 Hb_000130_170 Hb_000130_170 Hb_002450_130--Hb_000130_170 Hb_021943_070 Hb_021943_070 Hb_008096_020--Hb_021943_070 Hb_008096_020--Hb_002972_060 Hb_000084_130 Hb_000084_130 Hb_008096_020--Hb_000084_130 Hb_003656_150 Hb_003656_150 Hb_008096_020--Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_008096_020--Hb_006995_010 Hb_002204_040 Hb_002204_040 Hb_000291_130--Hb_002204_040 Hb_001579_040 Hb_001579_040 Hb_000291_130--Hb_001579_040 Hb_000671_040 Hb_000671_040 Hb_000291_130--Hb_000671_040 Hb_000291_130--Hb_008096_020 Hb_000291_130--Hb_002972_060 Hb_000876_010--Hb_005723_070 Hb_000876_010--Hb_002972_060 Hb_003025_060 Hb_003025_060 Hb_000876_010--Hb_003025_060 Hb_000876_010--Hb_000130_170 Hb_009119_010 Hb_009119_010 Hb_000876_010--Hb_009119_010 Hb_002972_060--Hb_009119_010 Hb_002972_060--Hb_005723_070 Hb_005318_010 Hb_005318_010 Hb_002972_060--Hb_005318_010 Hb_005723_070--Hb_000130_170 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_005723_070--Hb_000300_140 Hb_103093_010 Hb_103093_010 Hb_000130_170--Hb_103093_010 Hb_000340_330 Hb_000340_330 Hb_000130_170--Hb_000340_330 Hb_000130_170--Hb_005318_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.803776 0.233466 0 17.6813 1.35429 35.82
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0722 0.424218 0.558407 0.59548 0

CAGE analysis