Hb_002450_140

Information

Type -
Description -
Location Contig2450: 90748-92369
Sequence    

Annotation

kegg
ID rcu:RCOM_1496790
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative (EC:1.14.13.71)
nr
ID XP_002510830.1
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
swissprot
ID Q8VWZ7
description Geraniol 8-hydroxylase OS=Catharanthus roseus GN=CYP76B6 PE=1 SV=1
trembl
ID B9R9F5
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative OS=Ricinus communis GN=RCOM_1496790 PE=3 SV=1
Gene Ontology
ID GO:0005506
description probable -n-methylcoclaurine 3 -hydroxylase isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_140 0.0 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
2 Hb_003026_030 0.1511677597 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
3 Hb_001269_510 0.1567742389 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
4 Hb_000997_150 0.1763778103 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_044155_010 0.1807218179 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
6 Hb_023001_070 0.1819727443 - - PREDICTED: dnaJ protein ERDJ3A-like [Eucalyptus grandis]
7 Hb_001300_100 0.1860086842 - - -
8 Hb_013405_150 0.1906623178 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
9 Hb_000152_150 0.1931142653 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
10 Hb_003119_050 0.1985490416 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
11 Hb_069841_010 0.2003917166 - - resistance protein [Quercus suber]
12 Hb_002942_090 0.2036638149 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
13 Hb_000107_480 0.2063984889 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
14 Hb_000152_760 0.2068734586 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001839_020 0.2104296816 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
16 Hb_003228_030 0.2112494251 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
17 Hb_000003_300 0.2123263079 - - PREDICTED: uncharacterized protein LOC105631182 [Jatropha curcas]
18 Hb_000424_070 0.2155234092 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
19 Hb_000264_180 0.2158528294 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
20 Hb_000890_010 0.2162880241 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002450_140 Hb_002450_140 Hb_003026_030 Hb_003026_030 Hb_002450_140--Hb_003026_030 Hb_001269_510 Hb_001269_510 Hb_002450_140--Hb_001269_510 Hb_000997_150 Hb_000997_150 Hb_002450_140--Hb_000997_150 Hb_044155_010 Hb_044155_010 Hb_002450_140--Hb_044155_010 Hb_023001_070 Hb_023001_070 Hb_002450_140--Hb_023001_070 Hb_001300_100 Hb_001300_100 Hb_002450_140--Hb_001300_100 Hb_000264_180 Hb_000264_180 Hb_003026_030--Hb_000264_180 Hb_003026_030--Hb_044155_010 Hb_002400_230 Hb_002400_230 Hb_003026_030--Hb_002400_230 Hb_002291_060 Hb_002291_060 Hb_003026_030--Hb_002291_060 Hb_003026_030--Hb_000997_150 Hb_000424_070 Hb_000424_070 Hb_001269_510--Hb_000424_070 Hb_001776_200 Hb_001776_200 Hb_001269_510--Hb_001776_200 Hb_000058_050 Hb_000058_050 Hb_001269_510--Hb_000058_050 Hb_000313_290 Hb_000313_290 Hb_001269_510--Hb_000313_290 Hb_001269_510--Hb_003026_030 Hb_000732_070 Hb_000732_070 Hb_000997_150--Hb_000732_070 Hb_001454_220 Hb_001454_220 Hb_000997_150--Hb_001454_220 Hb_001269_310 Hb_001269_310 Hb_000997_150--Hb_001269_310 Hb_000997_150--Hb_002400_230 Hb_000997_150--Hb_044155_010 Hb_000185_150 Hb_000185_150 Hb_000997_150--Hb_000185_150 Hb_000077_120 Hb_000077_120 Hb_044155_010--Hb_000077_120 Hb_013405_150 Hb_013405_150 Hb_044155_010--Hb_013405_150 Hb_044155_010--Hb_002291_060 Hb_006132_040 Hb_006132_040 Hb_044155_010--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140 Hb_000538_010 Hb_000538_010 Hb_023001_070--Hb_000538_010 Hb_001307_010 Hb_001307_010 Hb_023001_070--Hb_001307_010 Hb_000163_240 Hb_000163_240 Hb_023001_070--Hb_000163_240 Hb_008406_040 Hb_008406_040 Hb_023001_070--Hb_008406_040 Hb_000218_020 Hb_000218_020 Hb_023001_070--Hb_000218_020 Hb_023001_070--Hb_001454_220 Hb_063805_010 Hb_063805_010 Hb_001300_100--Hb_063805_010 Hb_058551_010 Hb_058551_010 Hb_001300_100--Hb_058551_010 Hb_027472_210 Hb_027472_210 Hb_001300_100--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_001300_100--Hb_002890_150 Hb_001300_100--Hb_013405_150 Hb_002947_040 Hb_002947_040 Hb_001300_100--Hb_002947_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.28783 0.940797 1.21932 0.165265 0.994681 0.207534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.247552 0.170412 0.0457525 0.0388653 0.305683

CAGE analysis