Hb_002450_170

Information

Type transcription factor
Description TF Family: FAR1
Location Contig2450: 104521-108327
Sequence    

Annotation

kegg
ID cic:CICLE_v10018794mg
description hypothetical protein
nr
ID KHN02803.1
description Protein FAR1-RELATED SEQUENCE 5 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2P538
description Protein FAR1-RELATED SEQUENCE 5 OS=Glycine soja GN=glysoja_016045 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_170 0.0 transcription factor TF Family: FAR1 Protein FAR1-RELATED SEQUENCE 5 [Glycine soja]
2 Hb_007054_050 0.2739904979 - - -
3 Hb_131872_010 0.2778041743 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_001114_040 0.2804822976 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
5 Hb_011986_010 0.2868726832 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_007317_130 0.2936870046 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
7 Hb_063405_020 0.297777281 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
8 Hb_093543_010 0.3012653853 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_002360_030 0.3054047595 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
10 Hb_006717_080 0.30554786 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
11 Hb_007802_020 0.3061635142 - - PREDICTED: receptor-like protein 12 [Eucalyptus grandis]
12 Hb_062671_010 0.3071965909 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_002241_030 0.3087449158 - - Retrotransposon protein, putative [Theobroma cacao]
14 Hb_000619_030 0.3193804343 - - unnamed protein product [Vitis vinifera]
15 Hb_004218_260 0.3198495988 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
16 Hb_123046_010 0.3207079499 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
17 Hb_002226_050 0.3212038017 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
18 Hb_012707_020 0.3218099436 - - -
19 Hb_033594_050 0.324261527 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
20 Hb_003494_040 0.324825306 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]

Gene co-expression network

sample Hb_002450_170 Hb_002450_170 Hb_007054_050 Hb_007054_050 Hb_002450_170--Hb_007054_050 Hb_131872_010 Hb_131872_010 Hb_002450_170--Hb_131872_010 Hb_001114_040 Hb_001114_040 Hb_002450_170--Hb_001114_040 Hb_011986_010 Hb_011986_010 Hb_002450_170--Hb_011986_010 Hb_007317_130 Hb_007317_130 Hb_002450_170--Hb_007317_130 Hb_063405_020 Hb_063405_020 Hb_002450_170--Hb_063405_020 Hb_000460_070 Hb_000460_070 Hb_007054_050--Hb_000460_070 Hb_002360_030 Hb_002360_030 Hb_007054_050--Hb_002360_030 Hb_008698_010 Hb_008698_010 Hb_007054_050--Hb_008698_010 Hb_000683_080 Hb_000683_080 Hb_007054_050--Hb_000683_080 Hb_000122_210 Hb_000122_210 Hb_007054_050--Hb_000122_210 Hb_004218_260 Hb_004218_260 Hb_007054_050--Hb_004218_260 Hb_001341_020 Hb_001341_020 Hb_131872_010--Hb_001341_020 Hb_131102_010 Hb_131102_010 Hb_131872_010--Hb_131102_010 Hb_002226_050 Hb_002226_050 Hb_131872_010--Hb_002226_050 Hb_131872_010--Hb_007054_050 Hb_062671_010 Hb_062671_010 Hb_131872_010--Hb_062671_010 Hb_003944_020 Hb_003944_020 Hb_131872_010--Hb_003944_020 Hb_001114_040--Hb_011986_010 Hb_001114_040--Hb_063405_020 Hb_001114_040--Hb_000122_210 Hb_001114_040--Hb_007054_050 Hb_009150_030 Hb_009150_030 Hb_001114_040--Hb_009150_030 Hb_077935_010 Hb_077935_010 Hb_011986_010--Hb_077935_010 Hb_011986_010--Hb_007054_050 Hb_011986_010--Hb_009150_030 Hb_011986_010--Hb_000122_210 Hb_011986_010--Hb_063405_020 Hb_002078_270 Hb_002078_270 Hb_007317_130--Hb_002078_270 Hb_000958_100 Hb_000958_100 Hb_007317_130--Hb_000958_100 Hb_001080_030 Hb_001080_030 Hb_007317_130--Hb_001080_030 Hb_000212_370 Hb_000212_370 Hb_007317_130--Hb_000212_370 Hb_005695_080 Hb_005695_080 Hb_007317_130--Hb_005695_080 Hb_000032_400 Hb_000032_400 Hb_007317_130--Hb_000032_400 Hb_063405_020--Hb_002360_030 Hb_011310_080 Hb_011310_080 Hb_063405_020--Hb_011310_080 Hb_002188_140 Hb_002188_140 Hb_063405_020--Hb_002188_140 Hb_000001_130 Hb_000001_130 Hb_063405_020--Hb_000001_130 Hb_063405_020--Hb_007054_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0713333 0.643383 0 0.0135623 0.0680036 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.366596 0.128164 0.178784 0.397919 1.19337

CAGE analysis