Hb_002450_180

Information

Type -
Description -
Location Contig2450: 109389-114726
Sequence    

Annotation

kegg
ID rcu:RCOM_1496740
description hypothetical protein
nr
ID XP_002510825.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FXI5
description Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3
trembl
ID B9R9F0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1496740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25569: 109424-114277 , PASA_asmbl_25570: 109424-114657 , PASA_asmbl_25571: 110263-110597
cDNA
(Sanger)
(ID:Location)		 005_F18.ab1: 109424-113460

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000411_050 0.0786627902 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
3 Hb_000454_200 0.0807292325 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
4 Hb_000847_050 0.090314114 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
5 Hb_000946_050 0.0915361262 - - cytochrome P450, putative [Ricinus communis]
6 Hb_006634_090 0.0942055562 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
7 Hb_003376_300 0.1018244181 - - Aquaporin PIP2.2, putative [Ricinus communis]
8 Hb_001048_070 0.1105289551 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
9 Hb_000092_030 0.1108124686 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
10 Hb_005087_030 0.1111364665 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
11 Hb_012787_060 0.1152099594 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
12 Hb_001776_100 0.1162033688 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
13 Hb_000096_210 0.1174062436 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
14 Hb_002078_250 0.1203447569 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007625_030 0.1219831394 - - unknown [Medicago truncatula]
16 Hb_004166_020 0.122540436 - - -
17 Hb_002888_100 0.125722454 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
18 Hb_005679_120 0.1269120257 - - hypothetical protein RCOM_0284080 [Ricinus communis]
19 Hb_000739_160 0.1286672637 - - DNA binding protein, putative [Ricinus communis]
20 Hb_010164_020 0.132917655 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002450_180 Hb_002450_180 Hb_000411_050 Hb_000411_050 Hb_002450_180--Hb_000411_050 Hb_000454_200 Hb_000454_200 Hb_002450_180--Hb_000454_200 Hb_000847_050 Hb_000847_050 Hb_002450_180--Hb_000847_050 Hb_000946_050 Hb_000946_050 Hb_002450_180--Hb_000946_050 Hb_006634_090 Hb_006634_090 Hb_002450_180--Hb_006634_090 Hb_003376_300 Hb_003376_300 Hb_002450_180--Hb_003376_300 Hb_002078_250 Hb_002078_250 Hb_000411_050--Hb_002078_250 Hb_000411_050--Hb_000847_050 Hb_004544_090 Hb_004544_090 Hb_000411_050--Hb_004544_090 Hb_000411_050--Hb_000454_200 Hb_000679_260 Hb_000679_260 Hb_000411_050--Hb_000679_260 Hb_000454_200--Hb_000847_050 Hb_000454_200--Hb_003376_300 Hb_005679_120 Hb_005679_120 Hb_000454_200--Hb_005679_120 Hb_001856_160 Hb_001856_160 Hb_000454_200--Hb_001856_160 Hb_006934_020 Hb_006934_020 Hb_000847_050--Hb_006934_020 Hb_000847_050--Hb_006634_090 Hb_000497_100 Hb_000497_100 Hb_000847_050--Hb_000497_100 Hb_000092_030 Hb_000092_030 Hb_000946_050--Hb_000092_030 Hb_000096_210 Hb_000096_210 Hb_000946_050--Hb_000096_210 Hb_004122_060 Hb_004122_060 Hb_000946_050--Hb_004122_060 Hb_059000_010 Hb_059000_010 Hb_000946_050--Hb_059000_010 Hb_001141_160 Hb_001141_160 Hb_000946_050--Hb_001141_160 Hb_000739_160 Hb_000739_160 Hb_006634_090--Hb_000739_160 Hb_010417_100 Hb_010417_100 Hb_006634_090--Hb_010417_100 Hb_006634_090--Hb_000096_210 Hb_064985_010 Hb_064985_010 Hb_006634_090--Hb_064985_010 Hb_005087_030 Hb_005087_030 Hb_003376_300--Hb_005087_030 Hb_002028_160 Hb_002028_160 Hb_003376_300--Hb_002028_160 Hb_166009_010 Hb_166009_010 Hb_003376_300--Hb_166009_010 Hb_003376_300--Hb_001856_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186669 19.4407 17.2245 23.825 0.103025 0.0909979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100101 0.0393796 0.111719 19.0924 7.17809

CAGE analysis