Hb_002453_040

Information

Type -
Description -
Location Contig2453: 58284-59248
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09720g
description POPTRDRAFT_669415; hypothetical protein
nr
ID XP_012075155.1
description PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9ILW5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s09720g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25581: 58191-60538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002453_040 0.0 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
2 Hb_052530_010 0.0588007761 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
3 Hb_000445_320 0.073427276 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
4 Hb_000527_030 0.0791516738 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
5 Hb_000193_170 0.079943344 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
6 Hb_006332_030 0.0829610591 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
7 Hb_003464_040 0.0907953528 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
8 Hb_000187_020 0.0919603323 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
9 Hb_012368_040 0.0941068623 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011859_010 0.0944225243 - - hypothetical protein VITISV_027923 [Vitis vinifera]
11 Hb_000375_200 0.0953496367 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
12 Hb_008226_050 0.0958682974 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
13 Hb_005918_020 0.0992243606 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
14 Hb_003226_040 0.1009449124 - - PREDICTED: endoglucanase 17 [Populus euphratica]
15 Hb_004007_080 0.1017286744 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
16 Hb_004241_160 0.1051049992 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
17 Hb_011218_020 0.1083386931 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003641_040 0.1088757861 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
19 Hb_059832_010 0.1091141133 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
20 Hb_000816_080 0.1123922661 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_002453_040 Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_002453_040--Hb_052530_010 Hb_000445_320 Hb_000445_320 Hb_002453_040--Hb_000445_320 Hb_000527_030 Hb_000527_030 Hb_002453_040--Hb_000527_030 Hb_000193_170 Hb_000193_170 Hb_002453_040--Hb_000193_170 Hb_006332_030 Hb_006332_030 Hb_002453_040--Hb_006332_030 Hb_003464_040 Hb_003464_040 Hb_002453_040--Hb_003464_040 Hb_003226_040 Hb_003226_040 Hb_052530_010--Hb_003226_040 Hb_052530_010--Hb_000445_320 Hb_000816_080 Hb_000816_080 Hb_052530_010--Hb_000816_080 Hb_052530_010--Hb_000193_170 Hb_052530_010--Hb_003464_040 Hb_000187_020 Hb_000187_020 Hb_000445_320--Hb_000187_020 Hb_059832_010 Hb_059832_010 Hb_000445_320--Hb_059832_010 Hb_000445_320--Hb_000193_170 Hb_005918_020 Hb_005918_020 Hb_000445_320--Hb_005918_020 Hb_004007_080 Hb_004007_080 Hb_000527_030--Hb_004007_080 Hb_000527_030--Hb_052530_010 Hb_074660_010 Hb_074660_010 Hb_000527_030--Hb_074660_010 Hb_004241_160 Hb_004241_160 Hb_000527_030--Hb_004241_160 Hb_000083_280 Hb_000083_280 Hb_000527_030--Hb_000083_280 Hb_000375_200 Hb_000375_200 Hb_000193_170--Hb_000375_200 Hb_000193_170--Hb_003464_040 Hb_012368_040 Hb_012368_040 Hb_000193_170--Hb_012368_040 Hb_000130_400 Hb_000130_400 Hb_000193_170--Hb_000130_400 Hb_000193_170--Hb_000187_020 Hb_018663_010 Hb_018663_010 Hb_000193_170--Hb_018663_010 Hb_011218_020 Hb_011218_020 Hb_006332_030--Hb_011218_020 Hb_028995_020 Hb_028995_020 Hb_006332_030--Hb_028995_020 Hb_011859_010 Hb_011859_010 Hb_006332_030--Hb_011859_010 Hb_006332_030--Hb_012368_040 Hb_006332_030--Hb_003464_040 Hb_000563_110 Hb_000563_110 Hb_006332_030--Hb_000563_110 Hb_003464_040--Hb_012368_040 Hb_003464_040--Hb_000375_200 Hb_003464_040--Hb_003226_040 Hb_001652_090 Hb_001652_090 Hb_003464_040--Hb_001652_090 Hb_003464_040--Hb_000563_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.505636 34.5165 8.13178 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0612858 0 0.0877347 0 2.33799

CAGE analysis