Hb_002456_010

Information

Type -
Description -
Location Contig2456: 48285-56817
Sequence    

Annotation

kegg
ID rcu:RCOM_1106730
description protein kinase, putative (EC:2.7.11.25 3.1.3.16)
nr
ID XP_012086546.1
description PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
swissprot
ID Q940A2
description Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1
trembl
ID B9SJN7
description Protein kinase, putative OS=Ricinus communis GN=RCOM_1106730 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein kinase and pp2c-like domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25589: 48734-49978 , PASA_asmbl_25591: 50153-71880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002456_010 0.0 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
2 Hb_000111_290 0.0526641598 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
3 Hb_001876_050 0.0583978791 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
4 Hb_000614_240 0.0586366496 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
5 Hb_004324_130 0.0605902385 - - polypyrimidine tract binding protein, putative [Ricinus communis]
6 Hb_003544_060 0.062149231 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
7 Hb_000920_300 0.0653079253 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
8 Hb_007416_120 0.065398591 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
9 Hb_001999_310 0.067603002 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
10 Hb_001417_030 0.0696002834 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_003913_070 0.0708275518 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
12 Hb_001671_100 0.0709004799 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
13 Hb_000556_120 0.0710484672 - - Spastin, putative [Ricinus communis]
14 Hb_001221_430 0.0714427579 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
15 Hb_000107_660 0.0740513965 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
16 Hb_000181_400 0.0758651955 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
17 Hb_011618_090 0.0772263585 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
18 Hb_003544_030 0.0777203821 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
19 Hb_005663_110 0.0780707745 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
20 Hb_004934_050 0.0781714688 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_002456_010 Hb_002456_010 Hb_000111_290 Hb_000111_290 Hb_002456_010--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_002456_010--Hb_001876_050 Hb_000614_240 Hb_000614_240 Hb_002456_010--Hb_000614_240 Hb_004324_130 Hb_004324_130 Hb_002456_010--Hb_004324_130 Hb_003544_060 Hb_003544_060 Hb_002456_010--Hb_003544_060 Hb_000920_300 Hb_000920_300 Hb_002456_010--Hb_000920_300 Hb_001417_030 Hb_001417_030 Hb_000111_290--Hb_001417_030 Hb_000111_290--Hb_004324_130 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000111_290--Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000111_290--Hb_001999_310 Hb_007416_120 Hb_007416_120 Hb_001876_050--Hb_007416_120 Hb_001671_100 Hb_001671_100 Hb_001876_050--Hb_001671_100 Hb_001876_050--Hb_004324_130 Hb_001876_050--Hb_001999_310 Hb_006831_140 Hb_006831_140 Hb_001876_050--Hb_006831_140 Hb_000614_240--Hb_001999_310 Hb_010142_020 Hb_010142_020 Hb_000614_240--Hb_010142_020 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000011_060 Hb_000011_060 Hb_000614_240--Hb_000011_060 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_004324_130--Hb_007416_120 Hb_004324_130--Hb_006831_140 Hb_005918_010 Hb_005918_010 Hb_003544_060--Hb_005918_010 Hb_003906_200 Hb_003906_200 Hb_003544_060--Hb_003906_200 Hb_002234_090 Hb_002234_090 Hb_003544_060--Hb_002234_090 Hb_000836_460 Hb_000836_460 Hb_003544_060--Hb_000836_460 Hb_011618_090 Hb_011618_090 Hb_003544_060--Hb_011618_090 Hb_000920_300--Hb_003913_070 Hb_002641_030 Hb_002641_030 Hb_000920_300--Hb_002641_030 Hb_006520_040 Hb_006520_040 Hb_000920_300--Hb_006520_040 Hb_004934_050 Hb_004934_050 Hb_000920_300--Hb_004934_050 Hb_000920_300--Hb_001671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89824 6.49896 4.27832 5.15313 4.22993 4.08668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.7396 4.91124 5.09618 8.75942 5.05586

CAGE analysis