Hb_002456_020

Information

Type -
Description -
Location Contig2456: 77258-81045
Sequence    

Annotation

kegg
ID tcc:TCM_041726
description Ankyrin repeat family protein
nr
ID XP_007016265.1
description Ankyrin repeat family protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GZZ3
description Ankyrin repeat family protein OS=Theobroma cacao GN=TCM_041726 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002456_020 0.0 - - Ankyrin repeat family protein [Theobroma cacao]
2 Hb_002311_270 0.1984244619 - - PREDICTED: WD repeat-containing protein 43-like [Malus domestica]
3 Hb_012650_010 0.235291631 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_001652_070 0.2574659739 - - PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
5 Hb_016834_010 0.2581511392 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
6 Hb_000117_150 0.264046809 - - hypothetical protein RCOM_0079810 [Ricinus communis]
7 Hb_001832_100 0.2721923492 - - -
8 Hb_007718_020 0.3107281976 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
9 Hb_002255_080 0.3113213721 - - -
10 Hb_076226_010 0.3144810634 - - hypothetical protein VITISV_030432 [Vitis vinifera]
11 Hb_031474_020 0.3214111542 - - -
12 Hb_025668_020 0.3223962063 - - conserved hypothetical protein [Ricinus communis]
13 Hb_092650_010 0.3232608738 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
14 Hb_002217_390 0.327414832 - - PREDICTED: galactokinase [Jatropha curcas]
15 Hb_020411_010 0.3281163901 - - phosphoprotein phosphatase, putative [Ricinus communis]
16 Hb_001341_190 0.3288855491 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
17 Hb_004021_020 0.3301160758 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
18 Hb_002639_010 0.3324021387 - - pseudouridylate synthase, putative [Ricinus communis]
19 Hb_044380_020 0.3328388253 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_001054_010 0.3338871498 - - hypothetical protein VITISV_011091 [Vitis vinifera]

Gene co-expression network

sample Hb_002456_020 Hb_002456_020 Hb_002311_270 Hb_002311_270 Hb_002456_020--Hb_002311_270 Hb_012650_010 Hb_012650_010 Hb_002456_020--Hb_012650_010 Hb_001652_070 Hb_001652_070 Hb_002456_020--Hb_001652_070 Hb_016834_010 Hb_016834_010 Hb_002456_020--Hb_016834_010 Hb_000117_150 Hb_000117_150 Hb_002456_020--Hb_000117_150 Hb_001832_100 Hb_001832_100 Hb_002456_020--Hb_001832_100 Hb_012633_030 Hb_012633_030 Hb_002311_270--Hb_012633_030 Hb_002311_270--Hb_000117_150 Hb_005288_060 Hb_005288_060 Hb_002311_270--Hb_005288_060 Hb_001971_050 Hb_001971_050 Hb_002311_270--Hb_001971_050 Hb_002874_030 Hb_002874_030 Hb_002311_270--Hb_002874_030 Hb_008727_130 Hb_008727_130 Hb_012650_010--Hb_008727_130 Hb_020411_010 Hb_020411_010 Hb_012650_010--Hb_020411_010 Hb_012650_010--Hb_016834_010 Hb_012253_020 Hb_012253_020 Hb_012650_010--Hb_012253_020 Hb_000659_090 Hb_000659_090 Hb_012650_010--Hb_000659_090 Hb_002639_010 Hb_002639_010 Hb_001652_070--Hb_002639_010 Hb_002255_080 Hb_002255_080 Hb_001652_070--Hb_002255_080 Hb_001341_190 Hb_001341_190 Hb_001652_070--Hb_001341_190 Hb_001652_070--Hb_000117_150 Hb_022819_010 Hb_022819_010 Hb_001652_070--Hb_022819_010 Hb_016834_010--Hb_020411_010 Hb_000072_040 Hb_000072_040 Hb_016834_010--Hb_000072_040 Hb_001496_140 Hb_001496_140 Hb_016834_010--Hb_001496_140 Hb_092650_010 Hb_092650_010 Hb_016834_010--Hb_092650_010 Hb_002260_260 Hb_002260_260 Hb_016834_010--Hb_002260_260 Hb_016835_020 Hb_016835_020 Hb_000117_150--Hb_016835_020 Hb_025668_020 Hb_025668_020 Hb_000117_150--Hb_025668_020 Hb_000009_430 Hb_000009_430 Hb_000117_150--Hb_000009_430 Hb_000117_150--Hb_002255_080 Hb_001597_090 Hb_001597_090 Hb_000117_150--Hb_001597_090 Hb_104835_010 Hb_104835_010 Hb_000117_150--Hb_104835_010 Hb_001832_100--Hb_002311_270 Hb_033555_010 Hb_033555_010 Hb_001832_100--Hb_033555_010 Hb_044380_020 Hb_044380_020 Hb_001832_100--Hb_044380_020 Hb_001832_100--Hb_001652_070 Hb_001832_100--Hb_000117_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0197769 0 0.0118397 0.0386684 0 0.0557786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.136797 0.118576

CAGE analysis