Hb_002461_020

Information

Type -
Description -
Location Contig2461: 37574-46472
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11310g
description POPTRDRAFT_572583; hypothetical protein
nr
ID XP_012082939.1
description PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K908
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25601: 37760-46266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002461_020 0.0 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
2 Hb_005333_140 0.0455158327 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
3 Hb_000996_020 0.0468913068 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
4 Hb_000030_140 0.0499863936 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
5 Hb_000260_760 0.0504869948 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
6 Hb_001221_090 0.0620607937 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
7 Hb_170077_010 0.0627423849 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
8 Hb_000358_220 0.0639130206 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
9 Hb_000529_060 0.0644706747 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
10 Hb_000110_350 0.0647829107 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
11 Hb_000445_060 0.0671135424 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
12 Hb_023344_140 0.0690072352 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
13 Hb_005403_010 0.0702745779 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
14 Hb_012055_110 0.0705619402 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
15 Hb_005701_050 0.0706856446 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
16 Hb_003142_040 0.0714563888 - - Sf3a3 [Gossypium arboreum]
17 Hb_008642_060 0.0723304512 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
18 Hb_000189_630 0.0727367311 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
19 Hb_000046_600 0.0735520846 - - PREDICTED: cullin-1-like [Jatropha curcas]
20 Hb_004659_090 0.074090909 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]

Gene co-expression network

sample Hb_002461_020 Hb_002461_020 Hb_005333_140 Hb_005333_140 Hb_002461_020--Hb_005333_140 Hb_000996_020 Hb_000996_020 Hb_002461_020--Hb_000996_020 Hb_000030_140 Hb_000030_140 Hb_002461_020--Hb_000030_140 Hb_000260_760 Hb_000260_760 Hb_002461_020--Hb_000260_760 Hb_001221_090 Hb_001221_090 Hb_002461_020--Hb_001221_090 Hb_170077_010 Hb_170077_010 Hb_002461_020--Hb_170077_010 Hb_000529_060 Hb_000529_060 Hb_005333_140--Hb_000529_060 Hb_005333_140--Hb_000996_020 Hb_023344_140 Hb_023344_140 Hb_005333_140--Hb_023344_140 Hb_000046_600 Hb_000046_600 Hb_005333_140--Hb_000046_600 Hb_000189_630 Hb_000189_630 Hb_005333_140--Hb_000189_630 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_000030_140--Hb_000260_760 Hb_000030_140--Hb_000996_020 Hb_000035_100 Hb_000035_100 Hb_000030_140--Hb_000035_100 Hb_000030_140--Hb_005333_140 Hb_000110_350 Hb_000110_350 Hb_000030_140--Hb_000110_350 Hb_000428_030 Hb_000428_030 Hb_000260_760--Hb_000428_030 Hb_000260_760--Hb_000996_020 Hb_009178_010 Hb_009178_010 Hb_000260_760--Hb_009178_010 Hb_000260_760--Hb_170077_010 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_002092_070 Hb_002092_070 Hb_001221_090--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_170077_010--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_170077_010--Hb_023344_140 Hb_000358_220 Hb_000358_220 Hb_170077_010--Hb_000358_220 Hb_170077_010--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.7402 18.1782 16.1577 11.6258 10.8556 8.15278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.86329 4.58449 4.48964 11.6956 15.7377

CAGE analysis