Hb_002461_080

Information

Type -
Description -
Location Contig2461: 81113-82966
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11240g
description POPTRDRAFT_245492; hypothetical protein
nr
ID XP_012082950.1
description PREDICTED: probable pectinesterase 53 [Jatropha curcas]
swissprot
ID Q8VYZ3
description Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1
trembl
ID A0A067JWG3
description Pectinesterase OS=Jatropha curcas GN=JCGZ_14067 PE=3 SV=1
Gene Ontology
ID GO:0016788
description probable pectinesterase 53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002461_080 0.0 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
2 Hb_000181_450 0.1119222587 - - hypothetical protein JCGZ_20984 [Jatropha curcas]
3 Hb_008554_010 0.1464450295 - - -
4 Hb_011861_110 0.1727827575 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
5 Hb_001373_080 0.1813085221 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
6 Hb_001131_070 0.193036771 - - PREDICTED: uncharacterized protein LOC105638217 [Jatropha curcas]
7 Hb_073096_010 0.1932869541 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 45-like [Jatropha curcas]
8 Hb_005380_040 0.2137886188 - - hypothetical protein PRUPE_ppa015877mg, partial [Prunus persica]
9 Hb_066320_010 0.2157276346 - - hypothetical protein VITISV_027639 [Vitis vinifera]
10 Hb_001934_010 0.2158463023 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_133127_010 0.2182728452 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_004837_170 0.2214119761 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
13 Hb_160459_030 0.2241491997 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]
14 Hb_007403_010 0.2242740108 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
15 Hb_017661_020 0.229435902 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
16 Hb_004635_040 0.2302301476 - - Polyprotein, putative [Solanum demissum]
17 Hb_005000_200 0.230452739 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
18 Hb_010614_020 0.2306302907 - - BnaC05g27570D [Brassica napus]
19 Hb_003216_020 0.2321616312 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
20 Hb_140848_010 0.2321904685 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]

Gene co-expression network

sample Hb_002461_080 Hb_002461_080 Hb_000181_450 Hb_000181_450 Hb_002461_080--Hb_000181_450 Hb_008554_010 Hb_008554_010 Hb_002461_080--Hb_008554_010 Hb_011861_110 Hb_011861_110 Hb_002461_080--Hb_011861_110 Hb_001373_080 Hb_001373_080 Hb_002461_080--Hb_001373_080 Hb_001131_070 Hb_001131_070 Hb_002461_080--Hb_001131_070 Hb_073096_010 Hb_073096_010 Hb_002461_080--Hb_073096_010 Hb_160459_030 Hb_160459_030 Hb_000181_450--Hb_160459_030 Hb_001934_010 Hb_001934_010 Hb_000181_450--Hb_001934_010 Hb_000221_070 Hb_000221_070 Hb_000181_450--Hb_000221_070 Hb_000181_450--Hb_008554_010 Hb_002984_030 Hb_002984_030 Hb_000181_450--Hb_002984_030 Hb_008554_010--Hb_001373_080 Hb_004195_030 Hb_004195_030 Hb_008554_010--Hb_004195_030 Hb_008554_010--Hb_001131_070 Hb_000431_180 Hb_000431_180 Hb_008554_010--Hb_000431_180 Hb_000331_690 Hb_000331_690 Hb_008554_010--Hb_000331_690 Hb_010921_090 Hb_010921_090 Hb_011861_110--Hb_010921_090 Hb_133636_010 Hb_133636_010 Hb_011861_110--Hb_133636_010 Hb_000088_160 Hb_000088_160 Hb_011861_110--Hb_000088_160 Hb_007773_030 Hb_007773_030 Hb_011861_110--Hb_007773_030 Hb_002783_320 Hb_002783_320 Hb_011861_110--Hb_002783_320 Hb_131591_010 Hb_131591_010 Hb_001373_080--Hb_131591_010 Hb_001373_080--Hb_000431_180 Hb_001691_190 Hb_001691_190 Hb_001373_080--Hb_001691_190 Hb_002621_030 Hb_002621_030 Hb_001373_080--Hb_002621_030 Hb_002248_090 Hb_002248_090 Hb_001373_080--Hb_002248_090 Hb_001131_070--Hb_073096_010 Hb_001131_070--Hb_004195_030 Hb_000699_190 Hb_000699_190 Hb_001131_070--Hb_000699_190 Hb_001131_070--Hb_001373_080 Hb_073096_010--Hb_000699_190 Hb_073096_010--Hb_008554_010 Hb_073096_010--Hb_000181_450 Hb_073096_010--Hb_000221_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.201484 0.0306536 0.131848 0 0.044391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.118456 0

CAGE analysis