Hb_002471_030

Information

Type -
Description -
Location Contig2471: 33266-34942
Sequence    

Annotation

kegg
ID rcu:RCOM_0778100
description hypothetical protein
nr
ID XP_012072380.1
description PREDICTED: cyclin-J18 [Jatropha curcas]
swissprot
ID Q9C5X2
description Cyclin-J18 OS=Arabidopsis thaliana GN=CYCJ18 PE=2 SV=2
trembl
ID B9S7E5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0778100 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_030 0.0 - - PREDICTED: cyclin-J18 [Jatropha curcas]
2 Hb_014223_030 0.0004270997 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
3 Hb_088508_010 0.0011964115 - - cytochrome P450, putative [Ricinus communis]
4 Hb_014776_010 0.0017331864 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
5 Hb_007138_020 0.0026824925 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
6 Hb_001414_070 0.0028598695 - - Zinc finger protein GIS2 [Medicago truncatula]
7 Hb_000018_080 0.0030092051 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
8 Hb_007292_040 0.0051270866 - - Plastid developmental protein DAG [Theobroma cacao]
9 Hb_000762_100 0.005556794 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
10 Hb_001140_120 0.0058596598 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
11 Hb_001098_060 0.0067197777 - - -
12 Hb_000245_010 0.0082370191 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
13 Hb_003203_010 0.0093268966 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
14 Hb_004586_100 0.0138583164 - - PREDICTED: uncharacterized protein LOC105120428 isoform X2 [Populus euphratica]
15 Hb_028447_010 0.0143451698 - - hypothetical protein RCOM_1967580 [Ricinus communis]
16 Hb_005858_010 0.0147965957 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
17 Hb_001205_260 0.0159091293 - - DWNN domain isoform 2 [Theobroma cacao]
18 Hb_012758_020 0.0167221657 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
19 Hb_004669_010 0.0192635972 - - hypothetical protein JCGZ_26481 [Jatropha curcas]
20 Hb_002383_010 0.0210459904 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_030 Hb_002471_030 Hb_014223_030 Hb_014223_030 Hb_002471_030--Hb_014223_030 Hb_088508_010 Hb_088508_010 Hb_002471_030--Hb_088508_010 Hb_014776_010 Hb_014776_010 Hb_002471_030--Hb_014776_010 Hb_007138_020 Hb_007138_020 Hb_002471_030--Hb_007138_020 Hb_001414_070 Hb_001414_070 Hb_002471_030--Hb_001414_070 Hb_000018_080 Hb_000018_080 Hb_002471_030--Hb_000018_080 Hb_014223_030--Hb_088508_010 Hb_014223_030--Hb_014776_010 Hb_014223_030--Hb_007138_020 Hb_014223_030--Hb_001414_070 Hb_014223_030--Hb_000018_080 Hb_088508_010--Hb_014776_010 Hb_088508_010--Hb_007138_020 Hb_088508_010--Hb_001414_070 Hb_088508_010--Hb_000018_080 Hb_014776_010--Hb_007138_020 Hb_014776_010--Hb_001414_070 Hb_014776_010--Hb_000018_080 Hb_007138_020--Hb_001414_070 Hb_000245_010 Hb_000245_010 Hb_007138_020--Hb_000245_010 Hb_001414_070--Hb_000245_010 Hb_007292_040 Hb_007292_040 Hb_000018_080--Hb_007292_040 Hb_000762_100 Hb_000762_100 Hb_000018_080--Hb_000762_100 Hb_001140_120 Hb_001140_120 Hb_000018_080--Hb_001140_120 Hb_001098_060 Hb_001098_060 Hb_000018_080--Hb_001098_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0518559 0.0975672 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis