Hb_002471_070

Information

Type -
Description -
Location Contig2471: 59961-68397
Sequence    

Annotation

kegg
ID rcu:RCOM_1150260
description Tartrate-resistant acid phosphatase type 5 precursor, putative (EC:3.1.3.2)
nr
ID XP_002527552.1
description Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
swissprot
ID Q8H129
description Purple acid phosphatase 3 OS=Arabidopsis thaliana GN=PAP3 PE=2 SV=1
trembl
ID A0A0E0J2Z8
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0003993
description purple acid phosphatase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_070 0.0 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
2 Hb_003207_110 0.0982031278 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
3 Hb_005396_040 0.1305719802 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_000920_150 0.1362342412 - - annexin [Manihot esculenta]
5 Hb_002876_030 0.1402664103 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
6 Hb_023214_010 0.1495613393 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
7 Hb_001035_040 0.1532054726 - - unnamed protein product [Coffea canephora]
8 Hb_007140_020 0.1589061145 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
9 Hb_000481_020 0.1589770824 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
10 Hb_001922_190 0.1607413248 - - RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor [Hevea brasiliensis]
11 Hb_002235_400 0.1653515295 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
12 Hb_000982_070 0.1658605952 - - unnamed protein product [Vitis vinifera]
13 Hb_004738_010 0.1689726188 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
14 Hb_124315_040 0.1744880969 - - hypothetical protein 19 [Hevea brasiliensis]
15 Hb_030565_130 0.1754007416 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
16 Hb_000907_090 0.1771858284 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
17 Hb_006070_010 0.1775320135 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
18 Hb_003050_230 0.1779388107 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005918_030 0.178804778 - - hypothetical protein JCGZ_24769 [Jatropha curcas]
20 Hb_001373_150 0.1791682264 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_070 Hb_002471_070 Hb_003207_110 Hb_003207_110 Hb_002471_070--Hb_003207_110 Hb_005396_040 Hb_005396_040 Hb_002471_070--Hb_005396_040 Hb_000920_150 Hb_000920_150 Hb_002471_070--Hb_000920_150 Hb_002876_030 Hb_002876_030 Hb_002471_070--Hb_002876_030 Hb_023214_010 Hb_023214_010 Hb_002471_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_002471_070--Hb_001035_040 Hb_003207_110--Hb_000920_150 Hb_003207_110--Hb_005396_040 Hb_003207_110--Hb_023214_010 Hb_003207_110--Hb_002876_030 Hb_003207_110--Hb_001035_040 Hb_005396_040--Hb_023214_010 Hb_124315_040 Hb_124315_040 Hb_005396_040--Hb_124315_040 Hb_005396_040--Hb_002876_030 Hb_012347_010 Hb_012347_010 Hb_005396_040--Hb_012347_010 Hb_000920_150--Hb_001035_040 Hb_148121_010 Hb_148121_010 Hb_000920_150--Hb_148121_010 Hb_000920_150--Hb_023214_010 Hb_001741_090 Hb_001741_090 Hb_000920_150--Hb_001741_090 Hb_006070_010 Hb_006070_010 Hb_002876_030--Hb_006070_010 Hb_000139_330 Hb_000139_330 Hb_002876_030--Hb_000139_330 Hb_002876_030--Hb_124315_040 Hb_000107_070 Hb_000107_070 Hb_023214_010--Hb_000107_070 Hb_023214_010--Hb_124315_040 Hb_003020_310 Hb_003020_310 Hb_023214_010--Hb_003020_310 Hb_023214_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_023214_010--Hb_007120_070 Hb_001035_040--Hb_000107_070 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_001035_040--Hb_001741_090 Hb_003038_180 Hb_003038_180 Hb_001035_040--Hb_003038_180 Hb_001035_040--Hb_148121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.8052 0.826278 0.109826 4.4625 1.88612 2.29035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5469 5.40722 6.59021 1.32173 0.644465

CAGE analysis