Hb_002471_130

Information

Type -
Description -
Location Contig2471: 116788-120232
Sequence    

Annotation

kegg
ID rcu:RCOM_1150000
description cytochrome B561, putative
nr
ID XP_012072370.1
description PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
swissprot
ID Q67ZF6
description Probable transmembrane ascorbate ferrireductase 3 OS=Arabidopsis thaliana GN=CYB561C PE=2 SV=1
trembl
ID A0A067KPV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04810 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable transmembrane ascorbate ferrireductase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25649: 116931-117787 , PASA_asmbl_25656: 120186-120392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_130 0.0 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
2 Hb_031984_020 0.0422863228 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009151_010 0.0834639606 - - Peroxidase 3 [Morus notabilis]
4 Hb_000103_450 0.0843572807 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
5 Hb_053264_010 0.0869885343 - - beta glucosidase [Hevea brasiliensis]
6 Hb_009783_010 0.0877521534 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
7 Hb_006922_120 0.0907896372 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
8 Hb_001898_040 0.0948595844 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_000903_040 0.0958229695 - - PREDICTED: pirin-like protein [Jatropha curcas]
10 Hb_132381_010 0.0961863328 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_006846_040 0.0965997873 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
12 Hb_007113_060 0.0977943132 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
13 Hb_010883_170 0.0983154036 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
14 Hb_004162_200 0.0989501832 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
15 Hb_000003_280 0.1009736693 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007185_050 0.1011005784 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
17 Hb_000816_140 0.1025872222 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
18 Hb_013749_040 0.1032623102 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
19 Hb_000140_320 0.103968533 - - delta-8 sphingolipid desaturase [Vernicia fordii]
20 Hb_004020_030 0.1061198868 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]

Gene co-expression network

sample Hb_002471_130 Hb_002471_130 Hb_031984_020 Hb_031984_020 Hb_002471_130--Hb_031984_020 Hb_009151_010 Hb_009151_010 Hb_002471_130--Hb_009151_010 Hb_000103_450 Hb_000103_450 Hb_002471_130--Hb_000103_450 Hb_053264_010 Hb_053264_010 Hb_002471_130--Hb_053264_010 Hb_009783_010 Hb_009783_010 Hb_002471_130--Hb_009783_010 Hb_006922_120 Hb_006922_120 Hb_002471_130--Hb_006922_120 Hb_132381_010 Hb_132381_010 Hb_031984_020--Hb_132381_010 Hb_031984_020--Hb_009151_010 Hb_007113_060 Hb_007113_060 Hb_031984_020--Hb_007113_060 Hb_031984_020--Hb_006922_120 Hb_031984_020--Hb_053264_010 Hb_002311_030 Hb_002311_030 Hb_009151_010--Hb_002311_030 Hb_004162_200 Hb_004162_200 Hb_009151_010--Hb_004162_200 Hb_005116_150 Hb_005116_150 Hb_009151_010--Hb_005116_150 Hb_002067_070 Hb_002067_070 Hb_009151_010--Hb_002067_070 Hb_009151_010--Hb_007113_060 Hb_000531_030 Hb_000531_030 Hb_009151_010--Hb_000531_030 Hb_010407_130 Hb_010407_130 Hb_000103_450--Hb_010407_130 Hb_000103_450--Hb_053264_010 Hb_006846_040 Hb_006846_040 Hb_000103_450--Hb_006846_040 Hb_004435_020 Hb_004435_020 Hb_000103_450--Hb_004435_020 Hb_001047_090 Hb_001047_090 Hb_000103_450--Hb_001047_090 Hb_012653_050 Hb_012653_050 Hb_000103_450--Hb_012653_050 Hb_000903_040 Hb_000903_040 Hb_053264_010--Hb_000903_040 Hb_053264_010--Hb_006846_040 Hb_010962_020 Hb_010962_020 Hb_053264_010--Hb_010962_020 Hb_000003_280 Hb_000003_280 Hb_053264_010--Hb_000003_280 Hb_053264_010--Hb_001047_090 Hb_007904_280 Hb_007904_280 Hb_009783_010--Hb_007904_280 Hb_001898_040 Hb_001898_040 Hb_009783_010--Hb_001898_040 Hb_012132_050 Hb_012132_050 Hb_009783_010--Hb_012132_050 Hb_001136_040 Hb_001136_040 Hb_009783_010--Hb_001136_040 Hb_001136_160 Hb_001136_160 Hb_009783_010--Hb_001136_160 Hb_007185_050 Hb_007185_050 Hb_009783_010--Hb_007185_050 Hb_006977_010 Hb_006977_010 Hb_006922_120--Hb_006977_010 Hb_006922_120--Hb_007113_060 Hb_013749_040 Hb_013749_040 Hb_006922_120--Hb_013749_040 Hb_000816_140 Hb_000816_140 Hb_006922_120--Hb_000816_140 Hb_005440_040 Hb_005440_040 Hb_006922_120--Hb_005440_040 Hb_010883_170 Hb_010883_170 Hb_006922_120--Hb_010883_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.430521 3.77799 10.7829 0.118693 0.097049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0352005 0 0 0.188192 4.72857

CAGE analysis