Hb_002471_150

Information

Type -
Description -
Location Contig2471: 130750-133220
Sequence    

Annotation

kegg
ID rcu:RCOM_1149770
description 60S ribosomal protein L24, mitochondrial precursor, putative
nr
ID XP_012072366.1
description PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
swissprot
ID A0L5U1
description 50S ribosomal protein L28 OS=Magnetococcus sp. (strain MC-1) GN=rpmB PE=3 SV=1
trembl
ID A0A067L255
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04807 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 54s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_150 0.0 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
2 Hb_154826_010 0.0793789383 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_002375_090 0.0868450127 - - -
4 Hb_009793_010 0.0903946788 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
5 Hb_172632_090 0.0923057333 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
6 Hb_002043_130 0.0991987633 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
7 Hb_002226_070 0.0998192305 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
8 Hb_003780_030 0.0999874263 - - PREDICTED: protein CMSS1 [Jatropha curcas]
9 Hb_000172_320 0.1011158558 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
10 Hb_033834_040 0.1035329787 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000227_230 0.1037247918 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
12 Hb_002311_350 0.1039834308 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
13 Hb_000917_110 0.1057750761 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
14 Hb_004800_070 0.1067015224 - - -
15 Hb_000251_130 0.1075299324 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
16 Hb_000380_190 0.108420225 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
17 Hb_003126_080 0.1094306251 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
18 Hb_000007_100 0.1096453559 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
19 Hb_000009_460 0.1097535879 - - conserved hypothetical protein [Ricinus communis]
20 Hb_038172_010 0.1102573169 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_002471_150 Hb_002471_150 Hb_154826_010 Hb_154826_010 Hb_002471_150--Hb_154826_010 Hb_002375_090 Hb_002375_090 Hb_002471_150--Hb_002375_090 Hb_009793_010 Hb_009793_010 Hb_002471_150--Hb_009793_010 Hb_172632_090 Hb_172632_090 Hb_002471_150--Hb_172632_090 Hb_002043_130 Hb_002043_130 Hb_002471_150--Hb_002043_130 Hb_002226_070 Hb_002226_070 Hb_002471_150--Hb_002226_070 Hb_000227_230 Hb_000227_230 Hb_154826_010--Hb_000227_230 Hb_003683_040 Hb_003683_040 Hb_154826_010--Hb_003683_040 Hb_004800_070 Hb_004800_070 Hb_154826_010--Hb_004800_070 Hb_000009_460 Hb_000009_460 Hb_154826_010--Hb_000009_460 Hb_154826_010--Hb_009793_010 Hb_002375_090--Hb_000227_230 Hb_003734_140 Hb_003734_140 Hb_002375_090--Hb_003734_140 Hb_002925_030 Hb_002925_030 Hb_002375_090--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_002375_090--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_002375_090--Hb_003398_120 Hb_000007_100 Hb_000007_100 Hb_009793_010--Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_009793_010--Hb_000926_300 Hb_001814_050 Hb_001814_050 Hb_009793_010--Hb_001814_050 Hb_000152_420 Hb_000152_420 Hb_009793_010--Hb_000152_420 Hb_000707_030 Hb_000707_030 Hb_009793_010--Hb_000707_030 Hb_009554_010 Hb_009554_010 Hb_009793_010--Hb_009554_010 Hb_003126_080 Hb_003126_080 Hb_172632_090--Hb_003126_080 Hb_003615_010 Hb_003615_010 Hb_172632_090--Hb_003615_010 Hb_005993_040 Hb_005993_040 Hb_172632_090--Hb_005993_040 Hb_000251_130 Hb_000251_130 Hb_172632_090--Hb_000251_130 Hb_001226_160 Hb_001226_160 Hb_172632_090--Hb_001226_160 Hb_002311_350 Hb_002311_350 Hb_172632_090--Hb_002311_350 Hb_000172_320 Hb_000172_320 Hb_002043_130--Hb_000172_320 Hb_002043_130--Hb_001814_050 Hb_010068_020 Hb_010068_020 Hb_002043_130--Hb_010068_020 Hb_002043_130--Hb_009793_010 Hb_004375_100 Hb_004375_100 Hb_002043_130--Hb_004375_100 Hb_011150_010 Hb_011150_010 Hb_002043_130--Hb_011150_010 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_001489_060 Hb_001489_060 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_000056_200 Hb_000056_200 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.1492 5.36657 3.89568 5.39906 10.2492 11.3851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.60715 21.7104 8.03429 10.8259 2.62148

CAGE analysis