Hb_002471_160

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2471: 133860-134609
Sequence    

Annotation

kegg
ID rcu:RCOM_1149760
description zinc finger protein, putative
nr
ID XP_011021735.1
description PREDICTED: zinc finger protein 4-like [Populus euphratica]
swissprot
ID Q39263
description Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2
trembl
ID B9SNH3
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1149760 PE=4 SV=1
Gene Ontology
ID GO:0003700
description zinc finger protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_160 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]
2 Hb_001153_200 0.1395728325 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
3 Hb_010710_020 0.1411002024 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
4 Hb_001538_100 0.1451936574 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
5 Hb_002781_020 0.1485271484 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
6 Hb_075653_020 0.1489045317 - - -
7 Hb_003893_090 0.15171541 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
8 Hb_000454_110 0.1522006036 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
9 Hb_001123_120 0.1524883963 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
10 Hb_004109_020 0.1534706544 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
11 Hb_001329_210 0.1536275672 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
12 Hb_002929_050 0.1544109463 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
13 Hb_003680_070 0.1552903958 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
14 Hb_005618_040 0.1563407466 - - -
15 Hb_004958_050 0.1582700617 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
16 Hb_001999_120 0.1582843613 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
17 Hb_002540_030 0.1583704914 - - hypothetical protein 32 [Hevea brasiliensis]
18 Hb_000184_050 0.1586155029 - - NOI, putative [Ricinus communis]
19 Hb_008847_020 0.1605907853 - - 40S ribosomal protein S17C [Hevea brasiliensis]
20 Hb_000634_050 0.1622082491 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_160 Hb_002471_160 Hb_001153_200 Hb_001153_200 Hb_002471_160--Hb_001153_200 Hb_010710_020 Hb_010710_020 Hb_002471_160--Hb_010710_020 Hb_001538_100 Hb_001538_100 Hb_002471_160--Hb_001538_100 Hb_002781_020 Hb_002781_020 Hb_002471_160--Hb_002781_020 Hb_075653_020 Hb_075653_020 Hb_002471_160--Hb_075653_020 Hb_003893_090 Hb_003893_090 Hb_002471_160--Hb_003893_090 Hb_005618_040 Hb_005618_040 Hb_001153_200--Hb_005618_040 Hb_007666_020 Hb_007666_020 Hb_001153_200--Hb_007666_020 Hb_025087_010 Hb_025087_010 Hb_001153_200--Hb_025087_010 Hb_009026_050 Hb_009026_050 Hb_001153_200--Hb_009026_050 Hb_000934_030 Hb_000934_030 Hb_001153_200--Hb_000934_030 Hb_010710_020--Hb_001538_100 Hb_003680_070 Hb_003680_070 Hb_010710_020--Hb_003680_070 Hb_001153_080 Hb_001153_080 Hb_010710_020--Hb_001153_080 Hb_000163_200 Hb_000163_200 Hb_010710_020--Hb_000163_200 Hb_000261_460 Hb_000261_460 Hb_010710_020--Hb_000261_460 Hb_030565_070 Hb_030565_070 Hb_010710_020--Hb_030565_070 Hb_004109_020 Hb_004109_020 Hb_001538_100--Hb_004109_020 Hb_003376_130 Hb_003376_130 Hb_001538_100--Hb_003376_130 Hb_002540_030 Hb_002540_030 Hb_001538_100--Hb_002540_030 Hb_003086_100 Hb_003086_100 Hb_001538_100--Hb_003086_100 Hb_002107_120 Hb_002107_120 Hb_001538_100--Hb_002107_120 Hb_148930_010 Hb_148930_010 Hb_001538_100--Hb_148930_010 Hb_000634_050 Hb_000634_050 Hb_002781_020--Hb_000634_050 Hb_008847_020 Hb_008847_020 Hb_002781_020--Hb_008847_020 Hb_010172_030 Hb_010172_030 Hb_002781_020--Hb_010172_030 Hb_000161_050 Hb_000161_050 Hb_002781_020--Hb_000161_050 Hb_000362_210 Hb_000362_210 Hb_002781_020--Hb_000362_210 Hb_000045_190 Hb_000045_190 Hb_002781_020--Hb_000045_190 Hb_001623_430 Hb_001623_430 Hb_075653_020--Hb_001623_430 Hb_005539_210 Hb_005539_210 Hb_075653_020--Hb_005539_210 Hb_075653_020--Hb_003680_070 Hb_008699_040 Hb_008699_040 Hb_075653_020--Hb_008699_040 Hb_001723_080 Hb_001723_080 Hb_075653_020--Hb_001723_080 Hb_014720_080 Hb_014720_080 Hb_003893_090--Hb_014720_080 Hb_002909_070 Hb_002909_070 Hb_003893_090--Hb_002909_070 Hb_003893_090--Hb_002540_030 Hb_003125_150 Hb_003125_150 Hb_003893_090--Hb_003125_150 Hb_000815_260 Hb_000815_260 Hb_003893_090--Hb_000815_260 Hb_002182_060 Hb_002182_060 Hb_003893_090--Hb_002182_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57225 2.22557 0.272277 0.738882 1.8526 4.4633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5101 12.0922 4.2643 2.34739 0

CAGE analysis