Hb_002471_170

Information

Type -
Description -
Location Contig2471: 136710-138058
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_170 0.0 - - -
2 Hb_027472_090 0.1149164433 - - -
3 Hb_180333_010 0.1550575711 - - -
4 Hb_000788_120 0.1555250676 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
5 Hb_003687_140 0.1566189411 - - BnaCnng65050D [Brassica napus]
6 Hb_000521_150 0.1607476576 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
7 Hb_000926_290 0.169841326 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000699_020 0.169862016 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
9 Hb_000107_650 0.1713432129 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
10 Hb_002471_160 0.1719441073 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]
11 Hb_003057_130 0.1746670444 - - -
12 Hb_012305_060 0.1769782717 - - protein translocase, putative [Ricinus communis]
13 Hb_008695_160 0.1773640574 - - -
14 Hb_005410_030 0.1775258969 - - glutaredoxin 2 [Hevea brasiliensis]
15 Hb_003185_020 0.1815030633 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
16 Hb_000381_080 0.1827024739 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
17 Hb_001454_330 0.1837502699 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
18 Hb_000680_150 0.1854829051 - - PREDICTED: protein STU1-like [Jatropha curcas]
19 Hb_002918_280 0.1862386195 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
20 Hb_004958_050 0.1889387724 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]

Gene co-expression network

sample Hb_002471_170 Hb_002471_170 Hb_027472_090 Hb_027472_090 Hb_002471_170--Hb_027472_090 Hb_180333_010 Hb_180333_010 Hb_002471_170--Hb_180333_010 Hb_000788_120 Hb_000788_120 Hb_002471_170--Hb_000788_120 Hb_003687_140 Hb_003687_140 Hb_002471_170--Hb_003687_140 Hb_000521_150 Hb_000521_150 Hb_002471_170--Hb_000521_150 Hb_000926_290 Hb_000926_290 Hb_002471_170--Hb_000926_290 Hb_012305_060 Hb_012305_060 Hb_027472_090--Hb_012305_060 Hb_004545_160 Hb_004545_160 Hb_027472_090--Hb_004545_160 Hb_003185_020 Hb_003185_020 Hb_027472_090--Hb_003185_020 Hb_007625_020 Hb_007625_020 Hb_027472_090--Hb_007625_020 Hb_000008_320 Hb_000008_320 Hb_027472_090--Hb_000008_320 Hb_004607_150 Hb_004607_150 Hb_180333_010--Hb_004607_150 Hb_006189_010 Hb_006189_010 Hb_180333_010--Hb_006189_010 Hb_180333_010--Hb_003185_020 Hb_003106_070 Hb_003106_070 Hb_180333_010--Hb_003106_070 Hb_004012_010 Hb_004012_010 Hb_180333_010--Hb_004012_010 Hb_000085_270 Hb_000085_270 Hb_180333_010--Hb_000085_270 Hb_003057_130 Hb_003057_130 Hb_000788_120--Hb_003057_130 Hb_000788_120--Hb_012305_060 Hb_000175_040 Hb_000175_040 Hb_000788_120--Hb_000175_040 Hb_000788_120--Hb_027472_090 Hb_025246_010 Hb_025246_010 Hb_000788_120--Hb_025246_010 Hb_001999_120 Hb_001999_120 Hb_000788_120--Hb_001999_120 Hb_003687_140--Hb_000926_290 Hb_030765_020 Hb_030765_020 Hb_003687_140--Hb_030765_020 Hb_003687_140--Hb_004607_150 Hb_000699_020 Hb_000699_020 Hb_003687_140--Hb_000699_020 Hb_029584_140 Hb_029584_140 Hb_003687_140--Hb_029584_140 Hb_005031_070 Hb_005031_070 Hb_003687_140--Hb_005031_070 Hb_003226_150 Hb_003226_150 Hb_000521_150--Hb_003226_150 Hb_002529_100 Hb_002529_100 Hb_000521_150--Hb_002529_100 Hb_000521_150--Hb_000926_290 Hb_003581_090 Hb_003581_090 Hb_000521_150--Hb_003581_090 Hb_092706_020 Hb_092706_020 Hb_000521_150--Hb_092706_020 Hb_000045_190 Hb_000045_190 Hb_000521_150--Hb_000045_190 Hb_000926_290--Hb_003226_150 Hb_000926_290--Hb_002529_100 Hb_000926_290--Hb_003581_090 Hb_000926_290--Hb_000008_320 Hb_008695_190 Hb_008695_190 Hb_000926_290--Hb_008695_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.6819 1.37168 0.260646 0.112084 0.9878 2.86481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.95154 5.04154 1.16797 0.612342 0

CAGE analysis