Hb_002471_180

Information

Type -
Description -
Location Contig2471: 152959-156705
Sequence    

Annotation

kegg
ID rcu:RCOM_1149420
description receptor protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002527538.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID B9SNG9
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1149420 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25661: 153047-156482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_180 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_048476_150 0.0764412983 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
3 Hb_000139_230 0.1048818523 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
4 Hb_001021_220 0.1129477697 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
5 Hb_098209_010 0.1137794303 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
6 Hb_002902_020 0.115777471 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
7 Hb_000376_060 0.1174104039 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
8 Hb_005048_140 0.1175759568 - - conserved hypothetical protein [Ricinus communis]
9 Hb_147505_010 0.1191900649 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
10 Hb_000599_080 0.1213963627 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
11 Hb_005895_010 0.1248461633 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
12 Hb_001377_110 0.1251872427 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
13 Hb_000165_140 0.1252879671 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
14 Hb_001405_190 0.1253636633 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
15 Hb_001163_120 0.1254101126 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_065525_130 0.1265681864 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_000031_280 0.1266992599 - - -
18 Hb_002539_110 0.130104416 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
19 Hb_000042_340 0.1309940977 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
20 Hb_002092_100 0.1318319539 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002471_180 Hb_002471_180 Hb_048476_150 Hb_048476_150 Hb_002471_180--Hb_048476_150 Hb_000139_230 Hb_000139_230 Hb_002471_180--Hb_000139_230 Hb_001021_220 Hb_001021_220 Hb_002471_180--Hb_001021_220 Hb_098209_010 Hb_098209_010 Hb_002471_180--Hb_098209_010 Hb_002902_020 Hb_002902_020 Hb_002471_180--Hb_002902_020 Hb_000376_060 Hb_000376_060 Hb_002471_180--Hb_000376_060 Hb_048476_150--Hb_001021_220 Hb_001163_120 Hb_001163_120 Hb_048476_150--Hb_001163_120 Hb_013726_080 Hb_013726_080 Hb_048476_150--Hb_013726_080 Hb_001377_110 Hb_001377_110 Hb_048476_150--Hb_001377_110 Hb_000031_280 Hb_000031_280 Hb_048476_150--Hb_000031_280 Hb_000139_230--Hb_001021_220 Hb_006787_060 Hb_006787_060 Hb_000139_230--Hb_006787_060 Hb_029904_020 Hb_029904_020 Hb_000139_230--Hb_029904_020 Hb_000935_090 Hb_000935_090 Hb_000139_230--Hb_000935_090 Hb_000139_230--Hb_001377_110 Hb_000879_160 Hb_000879_160 Hb_000139_230--Hb_000879_160 Hb_001021_220--Hb_001377_110 Hb_001789_190 Hb_001789_190 Hb_001021_220--Hb_001789_190 Hb_001021_220--Hb_029904_020 Hb_001268_280 Hb_001268_280 Hb_001021_220--Hb_001268_280 Hb_132840_110 Hb_132840_110 Hb_001021_220--Hb_132840_110 Hb_000457_230 Hb_000457_230 Hb_098209_010--Hb_000457_230 Hb_011972_020 Hb_011972_020 Hb_098209_010--Hb_011972_020 Hb_098209_010--Hb_001377_110 Hb_001723_140 Hb_001723_140 Hb_098209_010--Hb_001723_140 Hb_005895_010 Hb_005895_010 Hb_098209_010--Hb_005895_010 Hb_002014_040 Hb_002014_040 Hb_098209_010--Hb_002014_040 Hb_000230_430 Hb_000230_430 Hb_002902_020--Hb_000230_430 Hb_001231_030 Hb_001231_030 Hb_002902_020--Hb_001231_030 Hb_096819_010 Hb_096819_010 Hb_002902_020--Hb_096819_010 Hb_000345_490 Hb_000345_490 Hb_002902_020--Hb_000345_490 Hb_002282_060 Hb_002282_060 Hb_002902_020--Hb_002282_060 Hb_000264_070 Hb_000264_070 Hb_002902_020--Hb_000264_070 Hb_000086_150 Hb_000086_150 Hb_000376_060--Hb_000086_150 Hb_007305_020 Hb_007305_020 Hb_000376_060--Hb_007305_020 Hb_011344_020 Hb_011344_020 Hb_000376_060--Hb_011344_020 Hb_004701_050 Hb_004701_050 Hb_000376_060--Hb_004701_050 Hb_041327_020 Hb_041327_020 Hb_000376_060--Hb_041327_020 Hb_000376_060--Hb_098209_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7967 16.9082 21.1001 14.7981 14.6427 20.326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.49458 1.93051 6.25002 4.90688 14.1977

CAGE analysis