Hb_002471_200

Information

Type -
Description -
Location Contig2471: 175499-176947
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11380g
description POPTRDRAFT_769457; hypothetical protein
nr
ID XP_002315845.2
description hypothetical protein POPTR_0010s11380g [Populus trichocarpa]
swissprot
ID Q9SA65
description Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1
trembl
ID B9HVS5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11380g PE=4 SV=2
Gene Ontology
ID GO:0030136
description clathrin assembly protein at2g25430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_200 0.0 - - hypothetical protein POPTR_0010s11380g [Populus trichocarpa]
2 Hb_085226_010 0.2057770574 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
3 Hb_001956_050 0.2066531055 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
4 Hb_004117_030 0.2103152096 - - PREDICTED: uncharacterized protein LOC104449809 [Eucalyptus grandis]
5 Hb_073973_170 0.2241369322 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
6 Hb_007765_060 0.224447937 - - Proliferating cell nuclear antigen [Theobroma cacao]
7 Hb_007741_170 0.2264811796 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
8 Hb_002307_050 0.2308409812 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
9 Hb_134951_010 0.2378630147 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
10 Hb_000270_200 0.2382612937 - - ATP binding protein, putative [Ricinus communis]
11 Hb_032844_020 0.2426398054 - - -
12 Hb_000965_020 0.2430194404 - - -
13 Hb_000062_350 0.2453148174 - - amino acid transporter, putative [Ricinus communis]
14 Hb_007416_200 0.245958044 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
15 Hb_001673_120 0.2462729239 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
16 Hb_000815_100 0.2464514876 - - -
17 Hb_001828_200 0.2473231157 - - ribosomal protein L13 [Populus trichocarpa]
18 Hb_004137_030 0.2512527329 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002619_010 0.2526212153 - - -
20 Hb_000046_300 0.2539857998 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002471_200 Hb_002471_200 Hb_085226_010 Hb_085226_010 Hb_002471_200--Hb_085226_010 Hb_001956_050 Hb_001956_050 Hb_002471_200--Hb_001956_050 Hb_004117_030 Hb_004117_030 Hb_002471_200--Hb_004117_030 Hb_073973_170 Hb_073973_170 Hb_002471_200--Hb_073973_170 Hb_007765_060 Hb_007765_060 Hb_002471_200--Hb_007765_060 Hb_007741_170 Hb_007741_170 Hb_002471_200--Hb_007741_170 Hb_000138_190 Hb_000138_190 Hb_085226_010--Hb_000138_190 Hb_085226_010--Hb_007765_060 Hb_057183_040 Hb_057183_040 Hb_085226_010--Hb_057183_040 Hb_100414_010 Hb_100414_010 Hb_085226_010--Hb_100414_010 Hb_085226_010--Hb_007741_170 Hb_000714_020 Hb_000714_020 Hb_001956_050--Hb_000714_020 Hb_011930_010 Hb_011930_010 Hb_001956_050--Hb_011930_010 Hb_011609_030 Hb_011609_030 Hb_001956_050--Hb_011609_030 Hb_004137_030 Hb_004137_030 Hb_001956_050--Hb_004137_030 Hb_007416_200 Hb_007416_200 Hb_001956_050--Hb_007416_200 Hb_003813_200 Hb_003813_200 Hb_001956_050--Hb_003813_200 Hb_000890_040 Hb_000890_040 Hb_004117_030--Hb_000890_040 Hb_063100_010 Hb_063100_010 Hb_004117_030--Hb_063100_010 Hb_000740_070 Hb_000740_070 Hb_004117_030--Hb_000740_070 Hb_007164_020 Hb_007164_020 Hb_004117_030--Hb_007164_020 Hb_004117_030--Hb_007765_060 Hb_001486_080 Hb_001486_080 Hb_004117_030--Hb_001486_080 Hb_073973_170--Hb_004137_030 Hb_002619_010 Hb_002619_010 Hb_073973_170--Hb_002619_010 Hb_073973_170--Hb_001956_050 Hb_073973_170--Hb_000714_020 Hb_001405_050 Hb_001405_050 Hb_073973_170--Hb_001405_050 Hb_027380_040 Hb_027380_040 Hb_073973_170--Hb_027380_040 Hb_007765_060--Hb_000740_070 Hb_005725_070 Hb_005725_070 Hb_007765_060--Hb_005725_070 Hb_000487_100 Hb_000487_100 Hb_007765_060--Hb_000487_100 Hb_007765_060--Hb_001956_050 Hb_000544_040 Hb_000544_040 Hb_007765_060--Hb_000544_040 Hb_005298_060 Hb_005298_060 Hb_007741_170--Hb_005298_060 Hb_007741_170--Hb_000138_190 Hb_007741_170--Hb_073973_170 Hb_002307_050 Hb_002307_050 Hb_007741_170--Hb_002307_050 Hb_007741_170--Hb_027380_040 Hb_002078_430 Hb_002078_430 Hb_007741_170--Hb_002078_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14226 0.0236242 0.0530884 0 0.0267141 0.0431331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0325012 0.0255691 0.0479741 0.0102111 0

CAGE analysis