Hb_002471_310

Information

Type -
Description -
Location Contig2471: 326018-333757
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11470g
description POPTRDRAFT_566421; hypothetical protein
nr
ID XP_012072347.1
description PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9ZUA5
description Vacuolar iron transporter 1 OS=Arabidopsis thaliana GN=VIT1 PE=2 SV=1
trembl
ID A0A067KT57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04791 PE=4 SV=1
Gene Ontology
ID GO:0005623
description vacuolar iron transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_310 0.0 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
2 Hb_002308_040 0.0251175606 - - methyladenine glycosylase family protein [Populus trichocarpa]
3 Hb_005665_100 0.0441609059 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
4 Hb_000664_010 0.0459016421 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
5 Hb_004693_040 0.049144702 - - -
6 Hb_029584_030 0.0558635346 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
7 Hb_024066_020 0.0559855084 - - P66 protein [Hevea brasiliensis]
8 Hb_018910_010 0.0561144322 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
9 Hb_007007_140 0.0593297759 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
10 Hb_011224_030 0.0604699682 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
11 Hb_001357_110 0.0618146034 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
12 Hb_150179_010 0.066425527 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
13 Hb_000049_190 0.0695342372 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_000227_290 0.0707256299 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
15 Hb_004732_080 0.0758049679 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
16 Hb_003685_070 0.0776287509 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
17 Hb_000731_180 0.0776711122 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
18 Hb_005614_060 0.0797636735 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
19 Hb_001557_030 0.0798724331 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
20 Hb_001496_150 0.0814053072 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_310 Hb_002471_310 Hb_002308_040 Hb_002308_040 Hb_002471_310--Hb_002308_040 Hb_005665_100 Hb_005665_100 Hb_002471_310--Hb_005665_100 Hb_000664_010 Hb_000664_010 Hb_002471_310--Hb_000664_010 Hb_004693_040 Hb_004693_040 Hb_002471_310--Hb_004693_040 Hb_029584_030 Hb_029584_030 Hb_002471_310--Hb_029584_030 Hb_024066_020 Hb_024066_020 Hb_002471_310--Hb_024066_020 Hb_002308_040--Hb_004693_040 Hb_002308_040--Hb_005665_100 Hb_002308_040--Hb_000664_010 Hb_018910_010 Hb_018910_010 Hb_002308_040--Hb_018910_010 Hb_007007_140 Hb_007007_140 Hb_002308_040--Hb_007007_140 Hb_005665_100--Hb_000664_010 Hb_005665_100--Hb_018910_010 Hb_000049_190 Hb_000049_190 Hb_005665_100--Hb_000049_190 Hb_005614_060 Hb_005614_060 Hb_005665_100--Hb_005614_060 Hb_000664_010--Hb_029584_030 Hb_011224_030 Hb_011224_030 Hb_000664_010--Hb_011224_030 Hb_150179_010 Hb_150179_010 Hb_000664_010--Hb_150179_010 Hb_004693_040--Hb_018910_010 Hb_004693_040--Hb_005665_100 Hb_004693_040--Hb_024066_020 Hb_004693_040--Hb_000049_190 Hb_029584_030--Hb_150179_010 Hb_029584_030--Hb_005665_100 Hb_029584_030--Hb_011224_030 Hb_000227_290 Hb_000227_290 Hb_029584_030--Hb_000227_290 Hb_024066_020--Hb_007007_140 Hb_004396_020 Hb_004396_020 Hb_024066_020--Hb_004396_020 Hb_004732_080 Hb_004732_080 Hb_024066_020--Hb_004732_080 Hb_024066_020--Hb_002308_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.41234 13.9678 0 0.0196127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0133516 1.71977

CAGE analysis