Hb_002473_030

Information

Type -
Description -
Location Contig2473: 41336-47210
Sequence    

Annotation

kegg
ID rcu:RCOM_0409820
description ATP binding protein, putative
nr
ID XP_012081704.1
description PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
swissprot
ID O81635
description Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2
trembl
ID A0A067K444
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_18733 PE=3 SV=1
Gene Ontology
ID GO:0005871
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25712: 41198-45121 , PASA_asmbl_25713: 45274-46095 , PASA_asmbl_25714: 46125-47145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002473_030 0.0 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
2 Hb_005649_050 0.0585213422 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004963_020 0.064966248 - - PREDICTED: patellin-4 [Populus euphratica]
4 Hb_004032_390 0.0722782404 - - CDK, putative [Ricinus communis]
5 Hb_001220_020 0.079849735 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
6 Hb_002837_030 0.0810769626 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003398_050 0.0817955558 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
8 Hb_162378_020 0.083039645 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
9 Hb_001564_100 0.0850016485 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
10 Hb_004459_030 0.0859748354 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
11 Hb_000364_140 0.0859956169 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
12 Hb_001210_030 0.0867049052 - - PREDICTED: plectin [Jatropha curcas]
13 Hb_001864_040 0.0876521984 - - PREDICTED: kinesin-1 [Jatropha curcas]
14 Hb_000316_070 0.0886371035 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
15 Hb_002197_010 0.0888750131 - - cyclin d, putative [Ricinus communis]
16 Hb_001969_120 0.092908132 - - PREDICTED: plectin [Jatropha curcas]
17 Hb_003776_050 0.0935646123 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
18 Hb_011063_030 0.0957518433 - - protein with unknown function [Ricinus communis]
19 Hb_001235_040 0.0967679902 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
20 Hb_000032_080 0.0968336999 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002473_030 Hb_002473_030 Hb_005649_050 Hb_005649_050 Hb_002473_030--Hb_005649_050 Hb_004963_020 Hb_004963_020 Hb_002473_030--Hb_004963_020 Hb_004032_390 Hb_004032_390 Hb_002473_030--Hb_004032_390 Hb_001220_020 Hb_001220_020 Hb_002473_030--Hb_001220_020 Hb_002837_030 Hb_002837_030 Hb_002473_030--Hb_002837_030 Hb_003398_050 Hb_003398_050 Hb_002473_030--Hb_003398_050 Hb_005649_050--Hb_004963_020 Hb_002197_010 Hb_002197_010 Hb_005649_050--Hb_002197_010 Hb_001210_030 Hb_001210_030 Hb_005649_050--Hb_001210_030 Hb_005649_050--Hb_002837_030 Hb_162378_020 Hb_162378_020 Hb_005649_050--Hb_162378_020 Hb_000316_070 Hb_000316_070 Hb_004963_020--Hb_000316_070 Hb_001168_030 Hb_001168_030 Hb_004963_020--Hb_001168_030 Hb_001864_040 Hb_001864_040 Hb_004963_020--Hb_001864_040 Hb_004963_020--Hb_002837_030 Hb_004032_390--Hb_001220_020 Hb_004032_390--Hb_003398_050 Hb_004032_390--Hb_162378_020 Hb_003776_050 Hb_003776_050 Hb_004032_390--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_004032_390--Hb_002928_150 Hb_004174_030 Hb_004174_030 Hb_004032_390--Hb_004174_030 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_004174_030 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_002837_030--Hb_004032_390 Hb_001564_100 Hb_001564_100 Hb_002837_030--Hb_001564_100 Hb_002837_030--Hb_162378_020 Hb_003398_050--Hb_002928_150 Hb_003398_050--Hb_003776_050 Hb_003398_050--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_003398_050--Hb_005914_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.183814 0.271319 22.0668 5.63537 0.0429109 0.0235781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.028848 0.0681037 0.0868591 0.859846 0.920361

CAGE analysis