Hb_002473_130

Information

Type -
Description -
Location Contig2473: 165521-172426
Sequence    

Annotation

kegg
ID pop:POPTR_0001s47480g
description POPTRDRAFT_815913; transducin family protein
nr
ID XP_012066256.1
description PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
swissprot
ID Q9FKT5
description THO complex subunit 3 OS=Arabidopsis thaliana GN=THO3 PE=1 SV=1
trembl
ID A0A067L389
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23824 PE=4 SV=1
Gene Ontology
ID GO:0080008
description tho complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25719: 165706-172500 , PASA_asmbl_25720: 168858-169357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002473_130 0.0 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
2 Hb_002271_020 0.0502823117 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
3 Hb_003226_140 0.0612553952 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
4 Hb_143398_010 0.0643565599 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
5 Hb_005291_030 0.0666261517 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
6 Hb_001279_150 0.066875225 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
7 Hb_005489_060 0.0682608471 - - Anamorsin, putative [Ricinus communis]
8 Hb_002303_070 0.0686759676 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
9 Hb_003125_010 0.0686781406 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
10 Hb_003918_010 0.0689357338 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
11 Hb_000215_110 0.0691517155 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
12 Hb_002477_330 0.0722521607 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
13 Hb_007017_030 0.0726663058 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
14 Hb_001828_190 0.0743515477 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
15 Hb_003633_030 0.0748168383 - - f-actin capping protein alpha, putative [Ricinus communis]
16 Hb_033594_120 0.0750703982 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
17 Hb_000092_170 0.0759294154 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
18 Hb_001638_170 0.0759762126 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
19 Hb_007416_280 0.0764669641 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008900_010 0.0766344963 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]

Gene co-expression network

sample Hb_002473_130 Hb_002473_130 Hb_002271_020 Hb_002271_020 Hb_002473_130--Hb_002271_020 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_143398_010 Hb_143398_010 Hb_002473_130--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002473_130--Hb_005291_030 Hb_001279_150 Hb_001279_150 Hb_002473_130--Hb_001279_150 Hb_005489_060 Hb_005489_060 Hb_002473_130--Hb_005489_060 Hb_002271_020--Hb_143398_010 Hb_002271_020--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_002271_020--Hb_001287_080 Hb_002271_020--Hb_005489_060 Hb_002271_020--Hb_001279_150 Hb_002303_070 Hb_002303_070 Hb_003226_140--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_003226_140--Hb_000215_110 Hb_000468_060 Hb_000468_060 Hb_003226_140--Hb_000468_060 Hb_001599_040 Hb_001599_040 Hb_003226_140--Hb_001599_040 Hb_005357_080 Hb_005357_080 Hb_003226_140--Hb_005357_080 Hb_010180_010 Hb_010180_010 Hb_143398_010--Hb_010180_010 Hb_009557_070 Hb_009557_070 Hb_143398_010--Hb_009557_070 Hb_000045_090 Hb_000045_090 Hb_143398_010--Hb_000045_090 Hb_000329_030 Hb_000329_030 Hb_143398_010--Hb_000329_030 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_005291_030--Hb_002303_070 Hb_003750_050 Hb_003750_050 Hb_001279_150--Hb_003750_050 Hb_001279_150--Hb_000215_110 Hb_001279_150--Hb_005489_060 Hb_007017_030 Hb_007017_030 Hb_001279_150--Hb_007017_030 Hb_000120_670 Hb_000120_670 Hb_001279_150--Hb_000120_670 Hb_002182_080 Hb_002182_080 Hb_001279_150--Hb_002182_080 Hb_005489_060--Hb_002182_080 Hb_005489_060--Hb_000215_110 Hb_000783_010 Hb_000783_010 Hb_005489_060--Hb_000783_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9823 14.7272 16.3011 24.9669 21.6114 39.6676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.7018 34.6447 24.9384 25.6472 16.2867

CAGE analysis