Hb_002475_020

Information

Type -
Description -
Location Contig2475: 11087-14323
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10430g
description hypothetical protein
nr
ID XP_011006846.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID U5FZX0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10430g PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25723: 12568-12799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
2 Hb_002556_020 0.0534188462 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
3 Hb_000141_230 0.0654662752 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
4 Hb_002999_090 0.0668639983 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000302_060 0.0712387423 - - unnamed protein product [Vitis vinifera]
6 Hb_003462_150 0.0724567473 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
7 Hb_004544_080 0.075696549 - - lectin protein kinase [Populus trichocarpa]
8 Hb_000951_030 0.0760603905 - - kinase, putative [Ricinus communis]
9 Hb_005218_070 0.0776505153 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
10 Hb_166813_010 0.0882331322 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_002204_030 0.0914225291 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
12 Hb_000608_080 0.0927252489 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
13 Hb_005228_170 0.0927411738 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_000948_070 0.0962965962 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
15 Hb_001901_010 0.0966960451 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
16 Hb_002081_040 0.1008094223 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
17 Hb_009515_010 0.1036946632 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
18 Hb_000567_310 0.1106819769 - - Miraculin precursor, putative [Ricinus communis]
19 Hb_001971_070 0.1123696088 - - unnamed protein product [Coffea canephora]
20 Hb_001173_050 0.11457377 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002475_020 Hb_002475_020 Hb_002556_020 Hb_002556_020 Hb_002475_020--Hb_002556_020 Hb_000141_230 Hb_000141_230 Hb_002475_020--Hb_000141_230 Hb_002999_090 Hb_002999_090 Hb_002475_020--Hb_002999_090 Hb_000302_060 Hb_000302_060 Hb_002475_020--Hb_000302_060 Hb_003462_150 Hb_003462_150 Hb_002475_020--Hb_003462_150 Hb_004544_080 Hb_004544_080 Hb_002475_020--Hb_004544_080 Hb_000951_030 Hb_000951_030 Hb_002556_020--Hb_000951_030 Hb_002556_020--Hb_002999_090 Hb_002556_020--Hb_000302_060 Hb_002556_020--Hb_000141_230 Hb_002556_020--Hb_003462_150 Hb_000141_230--Hb_003462_150 Hb_000141_230--Hb_004544_080 Hb_000608_080 Hb_000608_080 Hb_000141_230--Hb_000608_080 Hb_000141_230--Hb_000302_060 Hb_000141_230--Hb_002999_090 Hb_002999_090--Hb_003462_150 Hb_002999_090--Hb_004544_080 Hb_001901_010 Hb_001901_010 Hb_002999_090--Hb_001901_010 Hb_002204_030 Hb_002204_030 Hb_000302_060--Hb_002204_030 Hb_009515_010 Hb_009515_010 Hb_000302_060--Hb_009515_010 Hb_000302_060--Hb_000951_030 Hb_003462_150--Hb_004544_080 Hb_003462_150--Hb_000608_080 Hb_004544_080--Hb_000608_080 Hb_004544_080--Hb_002556_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.516234 0.0147134 0.319634 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.04448 0

CAGE analysis