Hb_002475_030

Information

Type -
Description -
Location Contig2475: 14324-16060
Sequence    

Annotation

kegg
ID rcu:RCOM_0458270
description hypothetical protein
nr
ID XP_002531929.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q84WN3
description Bidirectional sugar transporter SWEET17 OS=Arabidopsis thaliana GN=SWEET17 PE=2 SV=2
trembl
ID B9T116
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0458270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25725: 14990-15236 , PASA_asmbl_25726: 14814-16090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004128_090 0.0669345067 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
3 Hb_004010_090 0.0711597147 - - ATP binding protein, putative [Ricinus communis]
4 Hb_009150_060 0.0960205363 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
5 Hb_003085_080 0.098160698 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_003842_010 0.0995703334 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_010839_010 0.1031593826 - - receptor-kinase, putative [Ricinus communis]
8 Hb_001358_120 0.1115064824 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
9 Hb_000834_210 0.1167035304 - - unnamed protein product [Vitis vinifera]
10 Hb_000112_050 0.1174238734 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
11 Hb_000203_080 0.1174480736 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
12 Hb_000836_260 0.1175107635 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_004586_110 0.1226082738 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_006916_020 0.1269046252 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
15 Hb_001514_070 0.1280105139 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000017_320 0.1288264278 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
17 Hb_000471_010 0.1289000009 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000684_490 0.1309697597 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
19 Hb_009812_010 0.1318759168 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_003847_170 0.1340485347 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002475_030 Hb_002475_030 Hb_004128_090 Hb_004128_090 Hb_002475_030--Hb_004128_090 Hb_004010_090 Hb_004010_090 Hb_002475_030--Hb_004010_090 Hb_009150_060 Hb_009150_060 Hb_002475_030--Hb_009150_060 Hb_003085_080 Hb_003085_080 Hb_002475_030--Hb_003085_080 Hb_003842_010 Hb_003842_010 Hb_002475_030--Hb_003842_010 Hb_010839_010 Hb_010839_010 Hb_002475_030--Hb_010839_010 Hb_004128_090--Hb_004010_090 Hb_004128_090--Hb_010839_010 Hb_004128_090--Hb_009150_060 Hb_004128_090--Hb_003085_080 Hb_009812_010 Hb_009812_010 Hb_004128_090--Hb_009812_010 Hb_004010_090--Hb_010839_010 Hb_004010_090--Hb_009150_060 Hb_004010_090--Hb_009812_010 Hb_001514_070 Hb_001514_070 Hb_004010_090--Hb_001514_070 Hb_001300_140 Hb_001300_140 Hb_009150_060--Hb_001300_140 Hb_000836_260 Hb_000836_260 Hb_009150_060--Hb_000836_260 Hb_011440_010 Hb_011440_010 Hb_009150_060--Hb_011440_010 Hb_009150_060--Hb_010839_010 Hb_003085_080--Hb_003842_010 Hb_000203_080 Hb_000203_080 Hb_003085_080--Hb_000203_080 Hb_003085_080--Hb_010839_010 Hb_001014_150 Hb_001014_150 Hb_003085_080--Hb_001014_150 Hb_001345_010 Hb_001345_010 Hb_003842_010--Hb_001345_010 Hb_005276_220 Hb_005276_220 Hb_003842_010--Hb_005276_220 Hb_003842_010--Hb_000203_080 Hb_003842_010--Hb_009150_060 Hb_010839_010--Hb_009812_010 Hb_029576_080 Hb_029576_080 Hb_010839_010--Hb_029576_080 Hb_000011_120 Hb_000011_120 Hb_010839_010--Hb_000011_120 Hb_005116_010 Hb_005116_010 Hb_010839_010--Hb_005116_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.286197 4.04718 6.23231 6.76002 0.0178783 0.0203248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0436146 0.0343063 0 20.9822 6.50908

CAGE analysis