Hb_002475_040

Information

Type -
Description -
Location Contig2475: 36817-43441
Sequence    

Annotation

kegg
ID rcu:RCOM_0458390
description NADH-ubiquinone oxidoreductase, putative (EC:1.6.5.3)
nr
ID XP_012086440.1
description PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
swissprot
ID Q43644
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067JPL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22539 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25727: 36862-43256 , PASA_asmbl_25728: 40191-40840 , PASA_asmbl_25729: 39172-39440 , PASA_asmbl_25730: 38574-38796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_040 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
2 Hb_000284_230 0.058634711 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
3 Hb_004064_050 0.0675391381 - - Structural maintenance of chromosome, putative [Ricinus communis]
4 Hb_158092_080 0.0677105274 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
5 Hb_003124_160 0.0692899751 - - dynamin, putative [Ricinus communis]
6 Hb_012055_110 0.0704783177 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
7 Hb_001935_160 0.0706273807 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
8 Hb_073973_150 0.0711520405 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
9 Hb_002784_030 0.0735219238 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
10 Hb_004109_370 0.075807227 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
11 Hb_007894_160 0.077308978 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
12 Hb_008397_010 0.0778544869 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
13 Hb_004429_010 0.0783114689 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_007635_040 0.0805074866 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
15 Hb_156850_090 0.0815066068 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_000243_130 0.084921991 - - hypothetical protein M569_10795, partial [Genlisea aurea]
17 Hb_000261_100 0.0854244321 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
18 Hb_000103_570 0.0854551303 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
19 Hb_005402_040 0.0856151499 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
20 Hb_000608_230 0.0862689195 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002475_040 Hb_002475_040 Hb_000284_230 Hb_000284_230 Hb_002475_040--Hb_000284_230 Hb_004064_050 Hb_004064_050 Hb_002475_040--Hb_004064_050 Hb_158092_080 Hb_158092_080 Hb_002475_040--Hb_158092_080 Hb_003124_160 Hb_003124_160 Hb_002475_040--Hb_003124_160 Hb_012055_110 Hb_012055_110 Hb_002475_040--Hb_012055_110 Hb_001935_160 Hb_001935_160 Hb_002475_040--Hb_001935_160 Hb_001194_020 Hb_001194_020 Hb_000284_230--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_000284_230--Hb_006355_020 Hb_004064_050--Hb_158092_080 Hb_000243_130 Hb_000243_130 Hb_004064_050--Hb_000243_130 Hb_005402_040 Hb_005402_040 Hb_004064_050--Hb_005402_040 Hb_004064_050--Hb_003124_160 Hb_000377_050 Hb_000377_050 Hb_004064_050--Hb_000377_050 Hb_007123_050 Hb_007123_050 Hb_158092_080--Hb_007123_050 Hb_158092_080--Hb_000284_230 Hb_007894_160 Hb_007894_160 Hb_158092_080--Hb_007894_160 Hb_000608_300 Hb_000608_300 Hb_158092_080--Hb_000608_300 Hb_000176_130 Hb_000176_130 Hb_003124_160--Hb_000176_130 Hb_004429_010 Hb_004429_010 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_011202_020 Hb_011202_020 Hb_003124_160--Hb_011202_020 Hb_003124_160--Hb_005402_040 Hb_000261_030 Hb_000261_030 Hb_003124_160--Hb_000261_030 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_000066_150 Hb_000066_150 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_000941_030 Hb_000941_030 Hb_001935_160--Hb_000941_030 Hb_001935_160--Hb_012055_110 Hb_000027_050 Hb_000027_050 Hb_001935_160--Hb_000027_050 Hb_001935_160--Hb_000066_150 Hb_001935_160--Hb_000879_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.392 42.7841 36.967 41.7865 42.6394 31.1974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0546 10.1677 18.6359 42.8112 44.6846

CAGE analysis