Hb_002475_050

Information

Type -
Description -
Location Contig2475: 45320-57659
Sequence    

Annotation

kegg
ID cit:102608581
description nicastrin-like
nr
ID KDP25818.1
description hypothetical protein JCGZ_22540 [Jatropha curcas]
swissprot
ID Q8GUM5
description Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1
trembl
ID A0A067JSP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22540 PE=4 SV=1
Gene Ontology
ID GO:0005773
description nicastrin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25731: 45367-57653 , PASA_asmbl_25732: 45365-57616 , PASA_asmbl_25733: 48876-49267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_050 0.0 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
2 Hb_000372_040 0.0563318342 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_079326_010 0.0726901831 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
4 Hb_002986_050 0.0808077295 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
5 Hb_004881_050 0.0841303921 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
6 Hb_002739_080 0.0855180714 - - cystathionine beta-lyase, putative [Ricinus communis]
7 Hb_005000_270 0.0879815901 - - unnamed protein product [Vitis vinifera]
8 Hb_002774_070 0.0943482614 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
9 Hb_003716_020 0.0982073186 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
10 Hb_003581_020 0.099080882 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
11 Hb_002955_010 0.1009632896 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
12 Hb_001341_050 0.1025983216 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
13 Hb_009411_020 0.1050203053 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
14 Hb_000732_020 0.1053833747 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
15 Hb_001969_040 0.105896479 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
16 Hb_001268_210 0.1069298172 - - zinc finger protein, putative [Ricinus communis]
17 Hb_063047_010 0.1070960037 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
18 Hb_002159_040 0.1083776815 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
19 Hb_002837_070 0.10890195 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
20 Hb_003216_110 0.1093101296 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002475_050 Hb_002475_050 Hb_000372_040 Hb_000372_040 Hb_002475_050--Hb_000372_040 Hb_079326_010 Hb_079326_010 Hb_002475_050--Hb_079326_010 Hb_002986_050 Hb_002986_050 Hb_002475_050--Hb_002986_050 Hb_004881_050 Hb_004881_050 Hb_002475_050--Hb_004881_050 Hb_002739_080 Hb_002739_080 Hb_002475_050--Hb_002739_080 Hb_005000_270 Hb_005000_270 Hb_002475_050--Hb_005000_270 Hb_000372_040--Hb_004881_050 Hb_000372_040--Hb_079326_010 Hb_000372_040--Hb_002739_080 Hb_000372_040--Hb_005000_270 Hb_000134_360 Hb_000134_360 Hb_000372_040--Hb_000134_360 Hb_079326_010--Hb_004881_050 Hb_011644_020 Hb_011644_020 Hb_079326_010--Hb_011644_020 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_079326_010--Hb_000134_360 Hb_000212_280 Hb_000212_280 Hb_002986_050--Hb_000212_280 Hb_000732_020 Hb_000732_020 Hb_002986_050--Hb_000732_020 Hb_002986_050--Hb_000372_040 Hb_002986_050--Hb_005000_270 Hb_003216_110 Hb_003216_110 Hb_002986_050--Hb_003216_110 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_003434_060 Hb_003434_060 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_002739_080--Hb_003216_110 Hb_002048_090 Hb_002048_090 Hb_002739_080--Hb_002048_090 Hb_002739_080--Hb_079326_010 Hb_002159_040 Hb_002159_040 Hb_002739_080--Hb_002159_040 Hb_001582_030 Hb_001582_030 Hb_005000_270--Hb_001582_030 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_005000_270--Hb_000212_280 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.1238 10.1663 10.234 12.9444 40.6569 75.8392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0639 11.5189 15.9153 8.22811 6.24614

CAGE analysis