Hb_002475_070

Information

Type -
Description -
Location Contig2475: 75791-76940
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02440g
description hypothetical protein
nr
ID XP_006372522.1
description hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FJ83
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s02440g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25736: 75506-76062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_070 0.0 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
2 Hb_144783_010 0.0814396136 - - glutathione s-transferase, putative [Ricinus communis]
3 Hb_003893_100 0.0968088105 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
4 Hb_000297_180 0.1034827431 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
5 Hb_004316_130 0.108774158 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
6 Hb_000797_030 0.121233673 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
7 Hb_002521_010 0.1231313865 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
8 Hb_012368_080 0.1307301319 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
9 Hb_000934_170 0.131219707 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_003097_200 0.1330799528 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000614_180 0.1332152035 - - -
12 Hb_001758_120 0.1345704149 - - unnamed protein product [Vitis vinifera]
13 Hb_006637_040 0.1400341569 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
14 Hb_159015_010 0.1446734504 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_000161_250 0.1468989343 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
16 Hb_000347_530 0.147672742 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
17 Hb_000200_180 0.1478450987 - - -
18 Hb_001189_030 0.1481528064 - - hypothetical protein RCOM_1341480 [Ricinus communis]
19 Hb_000911_050 0.1507282356 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
20 Hb_018591_010 0.1533971086 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002475_070 Hb_002475_070 Hb_144783_010 Hb_144783_010 Hb_002475_070--Hb_144783_010 Hb_003893_100 Hb_003893_100 Hb_002475_070--Hb_003893_100 Hb_000297_180 Hb_000297_180 Hb_002475_070--Hb_000297_180 Hb_004316_130 Hb_004316_130 Hb_002475_070--Hb_004316_130 Hb_000797_030 Hb_000797_030 Hb_002475_070--Hb_000797_030 Hb_002521_010 Hb_002521_010 Hb_002475_070--Hb_002521_010 Hb_000200_180 Hb_000200_180 Hb_144783_010--Hb_000200_180 Hb_144783_010--Hb_004316_130 Hb_144783_010--Hb_000297_180 Hb_144783_010--Hb_002521_010 Hb_144783_010--Hb_003893_100 Hb_003893_100--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_003893_100--Hb_003097_200 Hb_003893_100--Hb_004316_130 Hb_012368_080 Hb_012368_080 Hb_003893_100--Hb_012368_080 Hb_003893_100--Hb_000297_180 Hb_006637_040 Hb_006637_040 Hb_003893_100--Hb_006637_040 Hb_000297_180--Hb_004316_130 Hb_000297_180--Hb_012368_080 Hb_035583_010 Hb_035583_010 Hb_000297_180--Hb_035583_010 Hb_004316_130--Hb_000797_030 Hb_004316_130--Hb_003097_200 Hb_000797_030--Hb_003097_200 Hb_000911_050 Hb_000911_050 Hb_000797_030--Hb_000911_050 Hb_000797_030--Hb_006637_040 Hb_001758_120 Hb_001758_120 Hb_000797_030--Hb_001758_120 Hb_028008_010 Hb_028008_010 Hb_002521_010--Hb_028008_010 Hb_002521_010--Hb_000200_180 Hb_006153_190 Hb_006153_190 Hb_002521_010--Hb_006153_190 Hb_000021_090 Hb_000021_090 Hb_002521_010--Hb_000021_090 Hb_000513_100 Hb_000513_100 Hb_002521_010--Hb_000513_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.591271 0.793418 8.08338 0.0627633 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.246387 0 31.8612 1.57646

CAGE analysis