Hb_002475_100

Information

Type -
Description -
Location Contig2475: 95220-96437
Sequence    

Annotation

kegg
ID rcu:RCOM_0052070
description ATRAD3, putative
nr
ID XP_012086446.1
description PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
swissprot
ID Q94II3
description Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1
trembl
ID A0A067JPM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22544 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_100 0.0 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
2 Hb_005489_160 0.1115766026 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
3 Hb_000120_980 0.1193265619 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
4 Hb_000589_180 0.1246567273 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
5 Hb_005333_100 0.1302091553 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001838_010 0.1374073319 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
7 Hb_000086_370 0.1377154755 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
8 Hb_000976_060 0.1379666386 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_000684_010 0.1426128335 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
10 Hb_001104_280 0.1434089802 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
11 Hb_004055_100 0.1448083165 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
12 Hb_000255_020 0.1518509676 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
13 Hb_005542_110 0.1560743509 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
14 Hb_000221_170 0.1602178374 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
15 Hb_000000_060 0.1623584914 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
16 Hb_001454_160 0.1634412175 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
17 Hb_000876_050 0.1644491053 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
18 Hb_002007_140 0.1651110631 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
19 Hb_003430_020 0.167448806 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
20 Hb_000141_220 0.1675991871 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]

Gene co-expression network

sample Hb_002475_100 Hb_002475_100 Hb_005489_160 Hb_005489_160 Hb_002475_100--Hb_005489_160 Hb_000120_980 Hb_000120_980 Hb_002475_100--Hb_000120_980 Hb_000589_180 Hb_000589_180 Hb_002475_100--Hb_000589_180 Hb_005333_100 Hb_005333_100 Hb_002475_100--Hb_005333_100 Hb_001838_010 Hb_001838_010 Hb_002475_100--Hb_001838_010 Hb_000086_370 Hb_000086_370 Hb_002475_100--Hb_000086_370 Hb_001104_280 Hb_001104_280 Hb_005489_160--Hb_001104_280 Hb_005797_030 Hb_005797_030 Hb_005489_160--Hb_005797_030 Hb_151364_010 Hb_151364_010 Hb_005489_160--Hb_151364_010 Hb_000221_170 Hb_000221_170 Hb_005489_160--Hb_000221_170 Hb_001864_010 Hb_001864_010 Hb_005489_160--Hb_001864_010 Hb_000684_010 Hb_000684_010 Hb_000120_980--Hb_000684_010 Hb_000120_980--Hb_005333_100 Hb_000876_050 Hb_000876_050 Hb_000120_980--Hb_000876_050 Hb_005542_110 Hb_005542_110 Hb_000120_980--Hb_005542_110 Hb_000120_980--Hb_000086_370 Hb_003430_020 Hb_003430_020 Hb_000589_180--Hb_003430_020 Hb_002007_140 Hb_002007_140 Hb_000589_180--Hb_002007_140 Hb_000589_180--Hb_000086_370 Hb_009581_050 Hb_009581_050 Hb_000589_180--Hb_009581_050 Hb_000000_060 Hb_000000_060 Hb_000589_180--Hb_000000_060 Hb_005333_100--Hb_000684_010 Hb_000976_060 Hb_000976_060 Hb_005333_100--Hb_000976_060 Hb_005333_100--Hb_001838_010 Hb_000255_020 Hb_000255_020 Hb_005333_100--Hb_000255_020 Hb_000489_020 Hb_000489_020 Hb_005333_100--Hb_000489_020 Hb_001838_010--Hb_000255_020 Hb_106969_010 Hb_106969_010 Hb_001838_010--Hb_106969_010 Hb_001838_010--Hb_002007_140 Hb_000265_010 Hb_000265_010 Hb_001838_010--Hb_000265_010 Hb_001838_010--Hb_000976_060 Hb_000657_030 Hb_000657_030 Hb_000086_370--Hb_000657_030 Hb_000521_300 Hb_000521_300 Hb_000086_370--Hb_000521_300 Hb_004195_170 Hb_004195_170 Hb_000086_370--Hb_004195_170 Hb_012807_060 Hb_012807_060 Hb_000086_370--Hb_012807_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.41807 0.0542913 0.476127 0.0490543 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0398551 0 0 1.8582 0.389616

CAGE analysis