Hb_002475_120

Information

Type -
Description -
Location Contig2475: 103419-106553
Sequence    

Annotation

kegg
ID rcu:RCOM_0052400
description receptor protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012086448.1
description PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID A0A067K0Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22547 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25739: 103411-106293 , PASA_asmbl_25740: 106302-106424 , PASA_asmbl_25741: 106554-106699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_120 0.0 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
2 Hb_006816_330 0.1682253699 - - exonuclease, putative [Ricinus communis]
3 Hb_008511_060 0.1777971415 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
4 Hb_004052_070 0.1786435304 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
5 Hb_001021_160 0.1814662377 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
6 Hb_012586_050 0.1842935729 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
7 Hb_149838_010 0.1852123275 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
8 Hb_154114_030 0.1873925668 - - amino acid binding protein, putative [Ricinus communis]
9 Hb_003449_060 0.1956239612 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
10 Hb_002960_110 0.2008793403 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
11 Hb_133230_010 0.2037287314 - - hypothetical protein L484_001846 [Morus notabilis]
12 Hb_000211_040 0.2061235194 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
13 Hb_011344_070 0.212594658 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
14 Hb_091761_010 0.2146649643 - - Rhomboid protein, putative [Ricinus communis]
15 Hb_000694_030 0.2147938079 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
16 Hb_000538_260 0.2161092104 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
17 Hb_114638_010 0.2162227645 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
18 Hb_004907_090 0.2168996161 - - ATP binding protein, putative [Ricinus communis]
19 Hb_002092_110 0.2178617288 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
20 Hb_000599_170 0.2200999692 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_002475_120 Hb_002475_120 Hb_006816_330 Hb_006816_330 Hb_002475_120--Hb_006816_330 Hb_008511_060 Hb_008511_060 Hb_002475_120--Hb_008511_060 Hb_004052_070 Hb_004052_070 Hb_002475_120--Hb_004052_070 Hb_001021_160 Hb_001021_160 Hb_002475_120--Hb_001021_160 Hb_012586_050 Hb_012586_050 Hb_002475_120--Hb_012586_050 Hb_149838_010 Hb_149838_010 Hb_002475_120--Hb_149838_010 Hb_001486_170 Hb_001486_170 Hb_006816_330--Hb_001486_170 Hb_006816_330--Hb_008511_060 Hb_013726_080 Hb_013726_080 Hb_006816_330--Hb_013726_080 Hb_002805_060 Hb_002805_060 Hb_006816_330--Hb_002805_060 Hb_003430_090 Hb_003430_090 Hb_006816_330--Hb_003430_090 Hb_006816_330--Hb_012586_050 Hb_006831_070 Hb_006831_070 Hb_008511_060--Hb_006831_070 Hb_002217_380 Hb_002217_380 Hb_008511_060--Hb_002217_380 Hb_009393_200 Hb_009393_200 Hb_008511_060--Hb_009393_200 Hb_086022_010 Hb_086022_010 Hb_008511_060--Hb_086022_010 Hb_010053_040 Hb_010053_040 Hb_008511_060--Hb_010053_040 Hb_000608_350 Hb_000608_350 Hb_008511_060--Hb_000608_350 Hb_030131_020 Hb_030131_020 Hb_004052_070--Hb_030131_020 Hb_002498_170 Hb_002498_170 Hb_004052_070--Hb_002498_170 Hb_000035_210 Hb_000035_210 Hb_004052_070--Hb_000035_210 Hb_004907_090 Hb_004907_090 Hb_004052_070--Hb_004907_090 Hb_004013_030 Hb_004013_030 Hb_004052_070--Hb_004013_030 Hb_003160_070 Hb_003160_070 Hb_004052_070--Hb_003160_070 Hb_000453_040 Hb_000453_040 Hb_001021_160--Hb_000453_040 Hb_003861_070 Hb_003861_070 Hb_001021_160--Hb_003861_070 Hb_000287_050 Hb_000287_050 Hb_001021_160--Hb_000287_050 Hb_001021_160--Hb_008511_060 Hb_011249_030 Hb_011249_030 Hb_001021_160--Hb_011249_030 Hb_028207_020 Hb_028207_020 Hb_001021_160--Hb_028207_020 Hb_002232_190 Hb_002232_190 Hb_012586_050--Hb_002232_190 Hb_000139_220 Hb_000139_220 Hb_012586_050--Hb_000139_220 Hb_012586_050--Hb_000453_040 Hb_004223_110 Hb_004223_110 Hb_012586_050--Hb_004223_110 Hb_019715_010 Hb_019715_010 Hb_012586_050--Hb_019715_010 Hb_000599_170 Hb_000599_170 Hb_012586_050--Hb_000599_170 Hb_002783_020 Hb_002783_020 Hb_149838_010--Hb_002783_020 Hb_000260_140 Hb_000260_140 Hb_149838_010--Hb_000260_140 Hb_027402_090 Hb_027402_090 Hb_149838_010--Hb_027402_090 Hb_002708_020 Hb_002708_020 Hb_149838_010--Hb_002708_020 Hb_000265_220 Hb_000265_220 Hb_149838_010--Hb_000265_220 Hb_002686_330 Hb_002686_330 Hb_149838_010--Hb_002686_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25997 2.08615 14.4967 6.40902 7.89681 3.8826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.717385 0.169359 0.475238 1.02096 3.39727

CAGE analysis