Hb_002475_130

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2475: 115590-116366
Sequence    

Annotation

kegg
ID rcu:RCOM_0241910
description zinc finger protein, putative
nr
ID XP_012086449.1
description PREDICTED: zinc finger protein 4 [Jatropha curcas]
swissprot
ID Q39263
description Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2
trembl
ID A0A067JPD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22548 PE=4 SV=1
Gene Ontology
ID GO:0003700
description zinc finger protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25742: 112299-116587
cDNA
(Sanger)
(ID:Location)		 004_J09.ab1: 112299-115992 , 049_B21.ab1: 112299-115942

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_130 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
2 Hb_001921_010 0.1232673131 - - ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_002739_070 0.1341308413 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
4 Hb_007259_020 0.1352688141 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
5 Hb_002232_050 0.1502962947 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
6 Hb_000532_130 0.1509001672 - - hypothetical protein [Anabaena sp. PCC 7108]
7 Hb_000233_100 0.1596477179 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_001863_450 0.161083115 - - cryptochrome 1.2 [Populus tremula]
9 Hb_147873_010 0.1615845299 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
10 Hb_007253_040 0.1703340681 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
11 Hb_060909_010 0.1703650902 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
12 Hb_033642_070 0.1715951477 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
13 Hb_002739_060 0.1737014493 - - -
14 Hb_008175_030 0.1744085329 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
15 Hb_062229_010 0.1766786559 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_000189_470 0.1770624645 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
17 Hb_001310_100 0.1785553562 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Jatropha curcas]
18 Hb_004030_070 0.1810650149 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
19 Hb_002375_050 0.1823050728 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
20 Hb_000333_120 0.1836863348 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]

Gene co-expression network

sample Hb_002475_130 Hb_002475_130 Hb_001921_010 Hb_001921_010 Hb_002475_130--Hb_001921_010 Hb_002739_070 Hb_002739_070 Hb_002475_130--Hb_002739_070 Hb_007259_020 Hb_007259_020 Hb_002475_130--Hb_007259_020 Hb_002232_050 Hb_002232_050 Hb_002475_130--Hb_002232_050 Hb_000532_130 Hb_000532_130 Hb_002475_130--Hb_000532_130 Hb_000233_100 Hb_000233_100 Hb_002475_130--Hb_000233_100 Hb_010080_020 Hb_010080_020 Hb_001921_010--Hb_010080_020 Hb_002218_070 Hb_002218_070 Hb_001921_010--Hb_002218_070 Hb_008175_030 Hb_008175_030 Hb_001921_010--Hb_008175_030 Hb_000819_010 Hb_000819_010 Hb_001921_010--Hb_000819_010 Hb_000333_120 Hb_000333_120 Hb_001921_010--Hb_000333_120 Hb_015882_020 Hb_015882_020 Hb_002739_070--Hb_015882_020 Hb_062229_010 Hb_062229_010 Hb_002739_070--Hb_062229_010 Hb_000522_130 Hb_000522_130 Hb_002739_070--Hb_000522_130 Hb_002739_070--Hb_001921_010 Hb_006618_020 Hb_006618_020 Hb_002739_070--Hb_006618_020 Hb_007253_040 Hb_007253_040 Hb_007259_020--Hb_007253_040 Hb_007259_020--Hb_000532_130 Hb_001310_100 Hb_001310_100 Hb_007259_020--Hb_001310_100 Hb_060909_010 Hb_060909_010 Hb_007259_020--Hb_060909_010 Hb_001248_110 Hb_001248_110 Hb_007259_020--Hb_001248_110 Hb_002232_050--Hb_001921_010 Hb_001227_040 Hb_001227_040 Hb_002232_050--Hb_001227_040 Hb_006718_040 Hb_006718_040 Hb_002232_050--Hb_006718_040 Hb_002232_050--Hb_000333_120 Hb_001946_060 Hb_001946_060 Hb_002232_050--Hb_001946_060 Hb_002739_060 Hb_002739_060 Hb_000532_130--Hb_002739_060 Hb_000532_130--Hb_007253_040 Hb_000532_130--Hb_008175_030 Hb_001408_150 Hb_001408_150 Hb_000532_130--Hb_001408_150 Hb_002609_150 Hb_002609_150 Hb_000532_130--Hb_002609_150 Hb_000532_130--Hb_060909_010 Hb_000233_100--Hb_060909_010 Hb_000233_100--Hb_001408_150 Hb_036568_010 Hb_036568_010 Hb_000233_100--Hb_036568_010 Hb_057079_020 Hb_057079_020 Hb_000233_100--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_000233_100--Hb_001410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.85361 33.065 5.31963 3.97795 2.68819 3.02284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140326 0.220667 0.0995175 10.3045 9.93695

CAGE analysis