Hb_002475_160

Information

Type -
Description -
Location Contig2475: 132142-134593
Sequence    

Annotation

kegg
ID rcu:RCOM_0241560
description nonsense-mediated mRNA decay protein, putative
nr
ID XP_012086455.1
description PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
swissprot
ID Q96D46
description 60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1
trembl
ID B9T5L2
description Nonsense-mediated mRNA decay protein, putative OS=Ricinus communis GN=RCOM_0241560 PE=4 SV=1
Gene Ontology
ID GO:0005634
description 60s ribosomal export protein nmd3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25744: 132190-134619 , PASA_asmbl_25745: 133815-134205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_160 0.0 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
2 Hb_007336_020 0.0621672727 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
3 Hb_007643_050 0.0638126232 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_007590_080 0.0712735746 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
5 Hb_001158_220 0.0718585951 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
6 Hb_000645_150 0.0733004303 - - zinc finger protein, putative [Ricinus communis]
7 Hb_011942_080 0.0770696131 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
8 Hb_008695_120 0.0778175137 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
9 Hb_003581_120 0.0781692523 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
10 Hb_002942_160 0.079135416 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
11 Hb_015941_030 0.0793216168 - - unknown [Populus trichocarpa]
12 Hb_061908_010 0.0805024257 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
13 Hb_000116_110 0.0815831083 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
14 Hb_000808_040 0.0816438719 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
15 Hb_000803_300 0.0817113772 - - nuclear movement protein nudc, putative [Ricinus communis]
16 Hb_000956_030 0.0818245382 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
17 Hb_002111_030 0.0827791876 - - PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]
18 Hb_031091_010 0.084471061 - - crooked neck protein, putative [Ricinus communis]
19 Hb_002097_090 0.0866698733 - - Splicing factor 3A subunit, putative [Ricinus communis]
20 Hb_002400_180 0.087125413 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002475_160 Hb_002475_160 Hb_007336_020 Hb_007336_020 Hb_002475_160--Hb_007336_020 Hb_007643_050 Hb_007643_050 Hb_002475_160--Hb_007643_050 Hb_007590_080 Hb_007590_080 Hb_002475_160--Hb_007590_080 Hb_001158_220 Hb_001158_220 Hb_002475_160--Hb_001158_220 Hb_000645_150 Hb_000645_150 Hb_002475_160--Hb_000645_150 Hb_011942_080 Hb_011942_080 Hb_002475_160--Hb_011942_080 Hb_007336_020--Hb_007590_080 Hb_000322_100 Hb_000322_100 Hb_007336_020--Hb_000322_100 Hb_007336_020--Hb_011942_080 Hb_001369_180 Hb_001369_180 Hb_007336_020--Hb_001369_180 Hb_008253_010 Hb_008253_010 Hb_007336_020--Hb_008253_010 Hb_007643_050--Hb_011942_080 Hb_001616_090 Hb_001616_090 Hb_007643_050--Hb_001616_090 Hb_000116_110 Hb_000116_110 Hb_007643_050--Hb_000116_110 Hb_031091_010 Hb_031091_010 Hb_007643_050--Hb_031091_010 Hb_007643_050--Hb_001158_220 Hb_002007_350 Hb_002007_350 Hb_007590_080--Hb_002007_350 Hb_007894_140 Hb_007894_140 Hb_007590_080--Hb_007894_140 Hb_007590_080--Hb_008253_010 Hb_000100_070 Hb_000100_070 Hb_007590_080--Hb_000100_070 Hb_000803_300 Hb_000803_300 Hb_007590_080--Hb_000803_300 Hb_005016_170 Hb_005016_170 Hb_001158_220--Hb_005016_170 Hb_061908_010 Hb_061908_010 Hb_001158_220--Hb_061908_010 Hb_002107_160 Hb_002107_160 Hb_001158_220--Hb_002107_160 Hb_001380_020 Hb_001380_020 Hb_001158_220--Hb_001380_020 Hb_000236_370 Hb_000236_370 Hb_000645_150--Hb_000236_370 Hb_002097_090 Hb_002097_090 Hb_000645_150--Hb_002097_090 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_012305_070 Hb_012305_070 Hb_000645_150--Hb_012305_070 Hb_000186_280 Hb_000186_280 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_003467_010 Hb_003467_010 Hb_011942_080--Hb_003467_010 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
142.962 70.1111 38.9082 51.7156 132.569 165.305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
141.787 71.5732 47.5131 46.0678 29.5836

CAGE analysis