Hb_002477_010

Information

Type -
Description -
Location Contig2477: 2983-4770
Sequence    

Annotation

kegg
ID rcu:RCOM_0653370
description hypothetical protein
nr
ID XP_002521338.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q570U6
description Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1
trembl
ID B9S5R9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0653370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25755: 3021-4996 , PASA_asmbl_25757: 3063-3322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012022_050 0.096804233 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
3 Hb_000288_020 0.1057382753 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002876_020 0.1241388206 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
5 Hb_003305_020 0.1270154521 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
6 Hb_032920_070 0.1281825094 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
7 Hb_009680_020 0.1298683423 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
8 Hb_020390_010 0.1305922513 - - PREDICTED: expansin-A13 [Jatropha curcas]
9 Hb_008147_090 0.1325175791 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003106_100 0.1333772252 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
11 Hb_021079_010 0.136211586 - - PREDICTED: histone H2B-like [Populus euphratica]
12 Hb_000120_770 0.1371607907 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006683_070 0.137345792 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
14 Hb_002272_270 0.1374306616 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
15 Hb_010997_090 0.1389604709 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
16 Hb_066842_010 0.1400871527 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
17 Hb_000179_270 0.1410811993 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
18 Hb_007943_200 0.1411285068 - - Uncharacterized protein isoform 2 [Theobroma cacao]
19 Hb_004007_110 0.1411337396 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
20 Hb_001269_190 0.1435016663 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_002477_010 Hb_002477_010 Hb_012022_050 Hb_012022_050 Hb_002477_010--Hb_012022_050 Hb_000288_020 Hb_000288_020 Hb_002477_010--Hb_000288_020 Hb_002876_020 Hb_002876_020 Hb_002477_010--Hb_002876_020 Hb_003305_020 Hb_003305_020 Hb_002477_010--Hb_003305_020 Hb_032920_070 Hb_032920_070 Hb_002477_010--Hb_032920_070 Hb_009680_020 Hb_009680_020 Hb_002477_010--Hb_009680_020 Hb_007383_020 Hb_007383_020 Hb_012022_050--Hb_007383_020 Hb_012022_050--Hb_032920_070 Hb_001946_310 Hb_001946_310 Hb_012022_050--Hb_001946_310 Hb_000297_120 Hb_000297_120 Hb_012022_050--Hb_000297_120 Hb_005648_010 Hb_005648_010 Hb_012022_050--Hb_005648_010 Hb_020390_010 Hb_020390_010 Hb_000288_020--Hb_020390_010 Hb_000288_020--Hb_032920_070 Hb_004007_110 Hb_004007_110 Hb_000288_020--Hb_004007_110 Hb_015057_020 Hb_015057_020 Hb_000288_020--Hb_015057_020 Hb_002110_100 Hb_002110_100 Hb_000288_020--Hb_002110_100 Hb_003106_100 Hb_003106_100 Hb_002876_020--Hb_003106_100 Hb_000649_140 Hb_000649_140 Hb_002876_020--Hb_000649_140 Hb_001019_150 Hb_001019_150 Hb_002876_020--Hb_001019_150 Hb_000428_060 Hb_000428_060 Hb_002876_020--Hb_000428_060 Hb_001353_010 Hb_001353_010 Hb_002876_020--Hb_001353_010 Hb_001242_080 Hb_001242_080 Hb_002876_020--Hb_001242_080 Hb_003305_020--Hb_001946_310 Hb_003305_020--Hb_012022_050 Hb_002660_170 Hb_002660_170 Hb_003305_020--Hb_002660_170 Hb_001318_050 Hb_001318_050 Hb_003305_020--Hb_001318_050 Hb_010997_090 Hb_010997_090 Hb_003305_020--Hb_010997_090 Hb_000025_190 Hb_000025_190 Hb_003305_020--Hb_000025_190 Hb_032920_070--Hb_020390_010 Hb_032920_070--Hb_002110_100 Hb_032920_070--Hb_000297_120 Hb_002392_010 Hb_002392_010 Hb_032920_070--Hb_002392_010 Hb_032920_070--Hb_015057_020 Hb_000185_220 Hb_000185_220 Hb_032920_070--Hb_000185_220 Hb_017987_030 Hb_017987_030 Hb_009680_020--Hb_017987_030 Hb_000107_150 Hb_000107_150 Hb_009680_020--Hb_000107_150 Hb_000110_250 Hb_000110_250 Hb_009680_020--Hb_000110_250 Hb_000179_270 Hb_000179_270 Hb_009680_020--Hb_000179_270 Hb_000733_190 Hb_000733_190 Hb_009680_020--Hb_000733_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.07993 3.33818 9.83171 26.1312 2.6786 8.44776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0801 19.5291 5.32493 13.2314 15.9435

CAGE analysis