Hb_002477_020

Information

Type -
Description -
Location Contig2477: 7445-10149
Sequence    

Annotation

kegg
ID rcu:RCOM_0653380
description hypothetical protein
nr
ID XP_012068893.1
description PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
swissprot
ID D5JWB3
description Sanguinarine reductase OS=Eschscholzia californica GN=SARED1 PE=1 SV=1
trembl
ID A0A067KX20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24710 PE=4 SV=1
Gene Ontology
ID GO:0009507
description nad -binding rossmann-fold superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25758: 6828-10204 , PASA_asmbl_25759: 8149-9142 , PASA_asmbl_25760: 6886-8142
cDNA
(Sanger)
(ID:Location)		 025_H21.ab1: 7854-10204 , 029_L13.ab1: 7909-10204

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_020 0.0 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
2 Hb_009296_030 0.0451134194 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
3 Hb_000317_180 0.081210756 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
4 Hb_022137_050 0.1008569308 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
5 Hb_134949_010 0.1037875047 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
6 Hb_001195_290 0.1096110328 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
7 Hb_000029_330 0.1128776377 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
8 Hb_000856_280 0.1140459052 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
9 Hb_006472_040 0.1146262854 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
10 Hb_000089_140 0.1153168776 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
11 Hb_000442_070 0.1154544701 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
12 Hb_009393_130 0.1164130792 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
13 Hb_010557_010 0.1195554842 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
14 Hb_000803_170 0.1211192915 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
15 Hb_007803_040 0.1245222253 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
16 Hb_003605_060 0.1252473517 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
17 Hb_002811_250 0.1253328416 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
18 Hb_011282_040 0.1261641687 - - Sec14 cytosolic factor, putative [Ricinus communis]
19 Hb_001266_160 0.1297550858 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
20 Hb_058620_080 0.1325752421 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002477_020 Hb_002477_020 Hb_009296_030 Hb_009296_030 Hb_002477_020--Hb_009296_030 Hb_000317_180 Hb_000317_180 Hb_002477_020--Hb_000317_180 Hb_022137_050 Hb_022137_050 Hb_002477_020--Hb_022137_050 Hb_134949_010 Hb_134949_010 Hb_002477_020--Hb_134949_010 Hb_001195_290 Hb_001195_290 Hb_002477_020--Hb_001195_290 Hb_000029_330 Hb_000029_330 Hb_002477_020--Hb_000029_330 Hb_009296_030--Hb_022137_050 Hb_009296_030--Hb_000317_180 Hb_009296_030--Hb_134949_010 Hb_000856_280 Hb_000856_280 Hb_009296_030--Hb_000856_280 Hb_006472_040 Hb_006472_040 Hb_009296_030--Hb_006472_040 Hb_000089_140 Hb_000089_140 Hb_000317_180--Hb_000089_140 Hb_000317_180--Hb_000029_330 Hb_000803_170 Hb_000803_170 Hb_000317_180--Hb_000803_170 Hb_001266_160 Hb_001266_160 Hb_000317_180--Hb_001266_160 Hb_015141_010 Hb_015141_010 Hb_022137_050--Hb_015141_010 Hb_002170_080 Hb_002170_080 Hb_022137_050--Hb_002170_080 Hb_000352_280 Hb_000352_280 Hb_022137_050--Hb_000352_280 Hb_022137_050--Hb_006472_040 Hb_002071_030 Hb_002071_030 Hb_134949_010--Hb_002071_030 Hb_001517_010 Hb_001517_010 Hb_134949_010--Hb_001517_010 Hb_134949_010--Hb_001195_290 Hb_134949_010--Hb_000029_330 Hb_134949_010--Hb_000317_180 Hb_001195_290--Hb_006472_040 Hb_001195_290--Hb_001517_010 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_000029_330--Hb_001266_160 Hb_002835_090 Hb_002835_090 Hb_000029_330--Hb_002835_090 Hb_000898_090 Hb_000898_090 Hb_000029_330--Hb_000898_090 Hb_004979_050 Hb_004979_050 Hb_000029_330--Hb_004979_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.176301 0.470563 6.3684 3.46447 0.152212 0.499937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.468934 1.10642 0.376572 0.494652 12.8892

CAGE analysis