Hb_002477_030

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig2477: 11314-20003
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06240g
description POPTRDRAFT_553628; myb family transcription factor family protein
nr
ID XP_012068894.1
description PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
swissprot
ID Q9M347
description Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6 PE=1 SV=1
trembl
ID A0A067KX71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24711 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25761: 12359-19954 , PASA_asmbl_25762: 12359-19954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_030 0.0 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
2 Hb_001736_040 0.0553184657 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
3 Hb_000827_070 0.063159166 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
4 Hb_181235_010 0.0673392857 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
5 Hb_000030_040 0.0734341418 - - yth domain-containing protein, putative [Ricinus communis]
6 Hb_001797_050 0.0772801344 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
7 Hb_005188_050 0.0800363624 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
8 Hb_002154_030 0.0802911803 - - RNA binding protein, putative [Ricinus communis]
9 Hb_000803_190 0.0807581849 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_007163_090 0.0819669571 - - PREDICTED: protein spt2-like [Jatropha curcas]
11 Hb_000977_070 0.0823540344 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
12 Hb_007757_110 0.0824329784 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
13 Hb_000152_820 0.0829376241 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
14 Hb_002810_020 0.0833278302 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
15 Hb_000101_240 0.0836691388 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
16 Hb_045793_010 0.0848658676 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
17 Hb_000487_290 0.0851033015 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
18 Hb_002150_030 0.0853118409 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
19 Hb_000025_360 0.0853186308 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_000815_210 0.0856085319 - - uncoupling protein 3, partial [Manihot esculenta]

Gene co-expression network

sample Hb_002477_030 Hb_002477_030 Hb_001736_040 Hb_001736_040 Hb_002477_030--Hb_001736_040 Hb_000827_070 Hb_000827_070 Hb_002477_030--Hb_000827_070 Hb_181235_010 Hb_181235_010 Hb_002477_030--Hb_181235_010 Hb_000030_040 Hb_000030_040 Hb_002477_030--Hb_000030_040 Hb_001797_050 Hb_001797_050 Hb_002477_030--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_002477_030--Hb_005188_050 Hb_000661_050 Hb_000661_050 Hb_001736_040--Hb_000661_050 Hb_000317_020 Hb_000317_020 Hb_001736_040--Hb_000317_020 Hb_000152_820 Hb_000152_820 Hb_001736_040--Hb_000152_820 Hb_001736_040--Hb_000827_070 Hb_000977_070 Hb_000977_070 Hb_001736_040--Hb_000977_070 Hb_000827_070--Hb_005188_050 Hb_045793_010 Hb_045793_010 Hb_000827_070--Hb_045793_010 Hb_000487_290 Hb_000487_290 Hb_000827_070--Hb_000487_290 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_000062_240 Hb_000062_240 Hb_181235_010--Hb_000062_240 Hb_000032_290 Hb_000032_290 Hb_181235_010--Hb_000032_290 Hb_000406_220 Hb_000406_220 Hb_181235_010--Hb_000406_220 Hb_001912_100 Hb_001912_100 Hb_000030_040--Hb_001912_100 Hb_000030_040--Hb_000487_290 Hb_075481_030 Hb_075481_030 Hb_000030_040--Hb_075481_030 Hb_001790_020 Hb_001790_020 Hb_000030_040--Hb_001790_020 Hb_106371_010 Hb_106371_010 Hb_000030_040--Hb_106371_010 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_007163_090 Hb_007163_090 Hb_001797_050--Hb_007163_090 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190 Hb_005188_050--Hb_000487_290 Hb_002603_120 Hb_002603_120 Hb_005188_050--Hb_002603_120 Hb_005188_050--Hb_000803_190 Hb_005188_050--Hb_045793_010 Hb_000025_360 Hb_000025_360 Hb_005188_050--Hb_000025_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.4371 38.0815 9.48624 15.9181 46.9941 54.8486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2941 37.9931 38.3743 21.3039 18.1194

CAGE analysis