Hb_002477_050

Information

Type -
Description -
Location Contig2477: 24512-25228
Sequence    

Annotation

kegg
ID mdm:103453694
description developmentally-regulated G-protein 2-like
nr
ID CDO97861.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068TNQ7
description Coffea canephora DH200=94 genomic scaffold, scaffold_2 OS=Coffea canephora GN=GSCOC_T00021793001 PE=4 SV=1
Gene Ontology
ID GO:0000166
description developmentally-regulated g-protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25770: 23377-24592 , PASA_asmbl_25771: 24908-25479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_050 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000215_310 0.1362690413 - - -
3 Hb_143629_130 0.1430493908 - - unnamed protein product [Coffea canephora]
4 Hb_099116_010 0.1470246488 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001195_160 0.1505773187 - - -
6 Hb_004709_020 0.1533067354 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
7 Hb_006629_010 0.1582463396 - - Glutathione S-transferase 2 isoform 3 [Theobroma cacao]
8 Hb_090158_010 0.1592776002 - - hypothetical protein RCOM_1968400 [Ricinus communis]
9 Hb_007943_200 0.1602519113 - - Uncharacterized protein isoform 2 [Theobroma cacao]
10 Hb_000603_070 0.1616613913 - - -
11 Hb_011942_060 0.1644076475 - - hypothetical protein CISIN_1g028965mg [Citrus sinensis]
12 Hb_102591_010 0.1651738641 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
13 Hb_000168_010 0.168387581 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
14 Hb_166053_010 0.168726279 - - glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]
15 Hb_000365_050 0.1697477323 - - -
16 Hb_005170_010 0.1709518141 - - -
17 Hb_000035_330 0.1717789465 - - Transmembrane protein 85 [Theobroma cacao]
18 Hb_001247_300 0.1731985351 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
19 Hb_002611_020 0.1778601594 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
20 Hb_002477_040 0.1784958504 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_002477_050 Hb_002477_050 Hb_000215_310 Hb_000215_310 Hb_002477_050--Hb_000215_310 Hb_143629_130 Hb_143629_130 Hb_002477_050--Hb_143629_130 Hb_099116_010 Hb_099116_010 Hb_002477_050--Hb_099116_010 Hb_001195_160 Hb_001195_160 Hb_002477_050--Hb_001195_160 Hb_004709_020 Hb_004709_020 Hb_002477_050--Hb_004709_020 Hb_006629_010 Hb_006629_010 Hb_002477_050--Hb_006629_010 Hb_000168_010 Hb_000168_010 Hb_000215_310--Hb_000168_010 Hb_000603_070 Hb_000603_070 Hb_000215_310--Hb_000603_070 Hb_038237_010 Hb_038237_010 Hb_000215_310--Hb_038237_010 Hb_000215_310--Hb_001195_160 Hb_090158_010 Hb_090158_010 Hb_000215_310--Hb_090158_010 Hb_002414_060 Hb_002414_060 Hb_143629_130--Hb_002414_060 Hb_007558_100 Hb_007558_100 Hb_143629_130--Hb_007558_100 Hb_000035_330 Hb_000035_330 Hb_143629_130--Hb_000035_330 Hb_003055_040 Hb_003055_040 Hb_143629_130--Hb_003055_040 Hb_002686_310 Hb_002686_310 Hb_143629_130--Hb_002686_310 Hb_004317_060 Hb_004317_060 Hb_143629_130--Hb_004317_060 Hb_007456_020 Hb_007456_020 Hb_099116_010--Hb_007456_020 Hb_099116_010--Hb_000168_010 Hb_004881_030 Hb_004881_030 Hb_099116_010--Hb_004881_030 Hb_003780_020 Hb_003780_020 Hb_099116_010--Hb_003780_020 Hb_000004_020 Hb_000004_020 Hb_099116_010--Hb_000004_020 Hb_000586_030 Hb_000586_030 Hb_099116_010--Hb_000586_030 Hb_001195_160--Hb_038237_010 Hb_001195_160--Hb_143629_130 Hb_001195_160--Hb_090158_010 Hb_131967_010 Hb_131967_010 Hb_001195_160--Hb_131967_010 Hb_004303_040 Hb_004303_040 Hb_004709_020--Hb_004303_040 Hb_009270_030 Hb_009270_030 Hb_004709_020--Hb_009270_030 Hb_002562_110 Hb_002562_110 Hb_004709_020--Hb_002562_110 Hb_082006_010 Hb_082006_010 Hb_004709_020--Hb_082006_010 Hb_008447_030 Hb_008447_030 Hb_004709_020--Hb_008447_030 Hb_004709_020--Hb_038237_010 Hb_181328_010 Hb_181328_010 Hb_006629_010--Hb_181328_010 Hb_002974_050 Hb_002974_050 Hb_006629_010--Hb_002974_050 Hb_000051_170 Hb_000051_170 Hb_006629_010--Hb_000051_170 Hb_000991_070 Hb_000991_070 Hb_006629_010--Hb_000991_070 Hb_000825_030 Hb_000825_030 Hb_006629_010--Hb_000825_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.459674 0.952431 0.682556 5.70643 1.4112 3.63586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25203 1.14481 0.353197 3.67481 1.75415

CAGE analysis