Hb_002477_070

Information

Type -
Description -
Location Contig2477: 28648-31685
Sequence    

Annotation

kegg
ID rcu:RCOM_0653440
description Charged multivesicular body protein 2a, putative
nr
ID XP_002521345.1
description Charged multivesicular body protein 2a, putative [Ricinus communis]
swissprot
ID Q9SKI2
description Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
trembl
ID B9S5S6
description Charged multivesicular body protein 2a, putative OS=Ricinus communis GN=RCOM_0653440 PE=4 SV=1
Gene Ontology
ID GO:0007034
description vacuolar protein sorting-associated protein 2 homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25773: 30950-31188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_070 0.0 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
2 Hb_002214_040 0.0597908389 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_009838_080 0.0631564718 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
4 Hb_002006_020 0.0663119302 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
5 Hb_000529_190 0.0668224645 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
6 Hb_008648_010 0.0671489841 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
7 Hb_000059_370 0.0710779692 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
8 Hb_012725_050 0.0715849839 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
9 Hb_000327_190 0.0722257419 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
10 Hb_004837_140 0.072423831 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
11 Hb_002226_070 0.074322626 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
12 Hb_000926_250 0.0758500291 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
13 Hb_000115_330 0.0760603077 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
14 Hb_002686_020 0.0764111887 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
15 Hb_004994_100 0.0764133689 - - acyl-CoA thioesterase, putative [Ricinus communis]
16 Hb_001105_030 0.0764171135 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
17 Hb_024185_020 0.0764242657 - - -
18 Hb_003599_040 0.0771246104 - - unnamed protein product [Vitis vinifera]
19 Hb_008878_030 0.0788576662 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
20 Hb_033834_040 0.0793551212 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002477_070 Hb_002477_070 Hb_002214_040 Hb_002214_040 Hb_002477_070--Hb_002214_040 Hb_009838_080 Hb_009838_080 Hb_002477_070--Hb_009838_080 Hb_002006_020 Hb_002006_020 Hb_002477_070--Hb_002006_020 Hb_000529_190 Hb_000529_190 Hb_002477_070--Hb_000529_190 Hb_008648_010 Hb_008648_010 Hb_002477_070--Hb_008648_010 Hb_000059_370 Hb_000059_370 Hb_002477_070--Hb_000059_370 Hb_002214_040--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_002214_040--Hb_000832_140 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002214_040--Hb_009838_080 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040 Hb_000107_620 Hb_000107_620 Hb_009838_080--Hb_000107_620 Hb_004254_120 Hb_004254_120 Hb_009838_080--Hb_004254_120 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020 Hb_153112_020 Hb_153112_020 Hb_009838_080--Hb_153112_020 Hb_001489_060 Hb_001489_060 Hb_002006_020--Hb_001489_060 Hb_063716_050 Hb_063716_050 Hb_002006_020--Hb_063716_050 Hb_003050_080 Hb_003050_080 Hb_002006_020--Hb_003050_080 Hb_002226_070 Hb_002226_070 Hb_002006_020--Hb_002226_070 Hb_004440_090 Hb_004440_090 Hb_002006_020--Hb_004440_090 Hb_000529_190--Hb_063716_050 Hb_000103_560 Hb_000103_560 Hb_000529_190--Hb_000103_560 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_001604_080 Hb_001604_080 Hb_000529_190--Hb_001604_080 Hb_000529_190--Hb_000832_140 Hb_008648_010--Hb_000059_370 Hb_012725_050 Hb_012725_050 Hb_008648_010--Hb_012725_050 Hb_005194_010 Hb_005194_010 Hb_008648_010--Hb_005194_010 Hb_001105_030 Hb_001105_030 Hb_008648_010--Hb_001105_030 Hb_032258_030 Hb_032258_030 Hb_008648_010--Hb_032258_030 Hb_000059_370--Hb_001105_030 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_000059_370--Hb_002226_070 Hb_000384_100 Hb_000384_100 Hb_000059_370--Hb_000384_100 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0587 4.63751 8.37171 9.90112 21.0556 19.3948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.4833 31.0192 21.1084 12.8571 10.901

CAGE analysis