Hb_002477_080

Information

Type -
Description -
Location Contig2477: 44056-45375
Sequence    

Annotation

kegg
ID rcu:RCOM_0653450
description hypothetical protein
nr
ID XP_002521346.1
description hypothetical protein RCOM_0653450 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5S7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0653450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25775: 45428-45627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_080 0.0 - - hypothetical protein RCOM_0653450 [Ricinus communis]
2 Hb_000899_060 0.0890523787 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
3 Hb_001823_070 0.1000755912 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
4 Hb_002431_090 0.1060683406 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000816_050 0.1065348474 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_103541_010 0.1101327721 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
7 Hb_000028_460 0.1103137083 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
8 Hb_126466_010 0.1142717604 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_000325_010 0.114932173 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
10 Hb_008092_020 0.1154482597 - - transcription factor, putative [Ricinus communis]
11 Hb_050898_010 0.1197992918 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
12 Hb_010417_090 0.1207313003 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
13 Hb_002970_070 0.1234610593 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
14 Hb_000090_020 0.1251101265 - - acyltransferase, putative [Ricinus communis]
15 Hb_000994_100 0.1252260767 - - RALFL33, putative [Ricinus communis]
16 Hb_000477_010 0.1269139494 - - PREDICTED: potassium channel AKT1-like [Jatropha curcas]
17 Hb_183209_020 0.1291619938 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
18 Hb_002374_520 0.1319311454 - - early nodulin 8 precursor family protein [Populus trichocarpa]
19 Hb_003835_030 0.136986486 - - glycosyltransferase, partial [Arabidopsis thaliana]
20 Hb_002272_070 0.1384390634 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]

Gene co-expression network

sample Hb_002477_080 Hb_002477_080 Hb_000899_060 Hb_000899_060 Hb_002477_080--Hb_000899_060 Hb_001823_070 Hb_001823_070 Hb_002477_080--Hb_001823_070 Hb_002431_090 Hb_002431_090 Hb_002477_080--Hb_002431_090 Hb_000816_050 Hb_000816_050 Hb_002477_080--Hb_000816_050 Hb_103541_010 Hb_103541_010 Hb_002477_080--Hb_103541_010 Hb_000028_460 Hb_000028_460 Hb_002477_080--Hb_000028_460 Hb_037684_010 Hb_037684_010 Hb_000899_060--Hb_037684_010 Hb_002374_520 Hb_002374_520 Hb_000899_060--Hb_002374_520 Hb_002598_020 Hb_002598_020 Hb_000899_060--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_000899_060--Hb_000090_020 Hb_000899_060--Hb_103541_010 Hb_006364_020 Hb_006364_020 Hb_001823_070--Hb_006364_020 Hb_126466_010 Hb_126466_010 Hb_001823_070--Hb_126466_010 Hb_000111_190 Hb_000111_190 Hb_001823_070--Hb_000111_190 Hb_000152_250 Hb_000152_250 Hb_001823_070--Hb_000152_250 Hb_130967_010 Hb_130967_010 Hb_001823_070--Hb_130967_010 Hb_189034_010 Hb_189034_010 Hb_002431_090--Hb_189034_010 Hb_002431_090--Hb_000816_050 Hb_003835_030 Hb_003835_030 Hb_002431_090--Hb_003835_030 Hb_000477_010 Hb_000477_010 Hb_002431_090--Hb_000477_010 Hb_008092_020 Hb_008092_020 Hb_002431_090--Hb_008092_020 Hb_064047_010 Hb_064047_010 Hb_000816_050--Hb_064047_010 Hb_050898_010 Hb_050898_010 Hb_000816_050--Hb_050898_010 Hb_000325_010 Hb_000325_010 Hb_000816_050--Hb_000325_010 Hb_002272_070 Hb_002272_070 Hb_000816_050--Hb_002272_070 Hb_103541_010--Hb_000090_020 Hb_012553_030 Hb_012553_030 Hb_103541_010--Hb_012553_030 Hb_103541_010--Hb_050898_010 Hb_183209_020 Hb_183209_020 Hb_103541_010--Hb_183209_020 Hb_000537_090 Hb_000537_090 Hb_103541_010--Hb_000537_090 Hb_103541_010--Hb_002598_020 Hb_000497_100 Hb_000497_100 Hb_000028_460--Hb_000497_100 Hb_000028_460--Hb_008092_020 Hb_038777_010 Hb_038777_010 Hb_000028_460--Hb_038777_010 Hb_005357_020 Hb_005357_020 Hb_000028_460--Hb_005357_020 Hb_002000_130 Hb_002000_130 Hb_000028_460--Hb_002000_130 Hb_012743_020 Hb_012743_020 Hb_000028_460--Hb_012743_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0158837 24.3628 3.64936 29.1891 0.0446359 0.0999752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0724698 0 0 15.2985 10.3754

CAGE analysis