Hb_002477_130

Information

Type -
Description -
Location Contig2477: 86988-94338
Sequence    

Annotation

kegg
ID rcu:RCOM_0654100
description hypothetical protein
nr
ID XP_002521351.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94AM9
description Polyadenylate-binding protein-interacting protein 4 OS=Arabidopsis thaliana GN=CID4 PE=2 SV=1
trembl
ID B9S5T2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0654100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25784: 92142-93384 , PASA_asmbl_25785: 84072-94327 , PASA_asmbl_25786: 86567-86848
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000365_140 0.0663485969 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
3 Hb_000424_010 0.0678397091 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
4 Hb_005895_040 0.0697904205 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
5 Hb_000640_220 0.0720337601 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
6 Hb_000358_250 0.0726317089 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
7 Hb_001771_120 0.074110721 - - K+ transport growth defect-like protein [Hevea brasiliensis]
8 Hb_008864_110 0.0758382416 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
9 Hb_001502_060 0.0762462161 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
10 Hb_009151_020 0.0789552483 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
11 Hb_028707_090 0.0801024349 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
12 Hb_001584_290 0.0802407854 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
13 Hb_002221_050 0.0808360331 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
14 Hb_000104_080 0.0818950166 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
15 Hb_000059_150 0.0820167135 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
16 Hb_000329_090 0.082297727 - - arginase, putative [Ricinus communis]
17 Hb_003581_120 0.0832178155 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
18 Hb_000743_040 0.0835360113 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
19 Hb_000422_140 0.0838042743 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
20 Hb_002273_130 0.0843286252 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]

Gene co-expression network

sample Hb_002477_130 Hb_002477_130 Hb_000365_140 Hb_000365_140 Hb_002477_130--Hb_000365_140 Hb_000424_010 Hb_000424_010 Hb_002477_130--Hb_000424_010 Hb_005895_040 Hb_005895_040 Hb_002477_130--Hb_005895_040 Hb_000640_220 Hb_000640_220 Hb_002477_130--Hb_000640_220 Hb_000358_250 Hb_000358_250 Hb_002477_130--Hb_000358_250 Hb_001771_120 Hb_001771_120 Hb_002477_130--Hb_001771_120 Hb_000946_120 Hb_000946_120 Hb_000365_140--Hb_000946_120 Hb_000032_490 Hb_000032_490 Hb_000365_140--Hb_000032_490 Hb_000422_140 Hb_000422_140 Hb_000365_140--Hb_000422_140 Hb_000365_140--Hb_000640_220 Hb_000365_140--Hb_005895_040 Hb_000035_040 Hb_000035_040 Hb_000424_010--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_000424_010--Hb_002652_040 Hb_002221_050 Hb_002221_050 Hb_000424_010--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_000424_010--Hb_000529_260 Hb_000139_250 Hb_000139_250 Hb_000424_010--Hb_000139_250 Hb_175338_020 Hb_175338_020 Hb_000424_010--Hb_175338_020 Hb_005895_040--Hb_000422_140 Hb_009151_020 Hb_009151_020 Hb_005895_040--Hb_009151_020 Hb_004656_060 Hb_004656_060 Hb_005895_040--Hb_004656_060 Hb_004701_030 Hb_004701_030 Hb_005895_040--Hb_004701_030 Hb_002499_070 Hb_002499_070 Hb_005895_040--Hb_002499_070 Hb_021422_010 Hb_021422_010 Hb_000640_220--Hb_021422_010 Hb_000104_080 Hb_000104_080 Hb_000640_220--Hb_000104_080 Hb_001584_290 Hb_001584_290 Hb_000640_220--Hb_001584_290 Hb_003126_100 Hb_003126_100 Hb_000640_220--Hb_003126_100 Hb_031939_010 Hb_031939_010 Hb_000358_250--Hb_031939_010 Hb_000116_180 Hb_000116_180 Hb_000358_250--Hb_000116_180 Hb_000538_100 Hb_000538_100 Hb_000358_250--Hb_000538_100 Hb_000429_200 Hb_000429_200 Hb_000358_250--Hb_000429_200 Hb_003849_250 Hb_003849_250 Hb_000358_250--Hb_003849_250 Hb_007943_120 Hb_007943_120 Hb_001771_120--Hb_007943_120 Hb_001771_120--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_001771_120--Hb_000329_130 Hb_001771_120--Hb_000424_010 Hb_001771_120--Hb_009151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5311 18.6143 12.9259 14.5167 44.0273 31.2559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5146 12.5546 12.1782 11.6563 11.4726

CAGE analysis