Hb_002477_140

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig2477: 99939-104840
Sequence    

Annotation

kegg
ID rcu:RCOM_0654210
description Nuclear transcription factor Y subunit A-3, putative
nr
ID XP_012068910.1
description PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
swissprot
ID Q93ZH2
description Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2
trembl
ID A0A067KX27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24720 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit a-3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25787: 100093-104795 , PASA_asmbl_25788: 100093-104664 , PASA_asmbl_25789: 100092-104664 , PASA_asmbl_25790: 100429-104788 , PASA_asmbl_25791: 101532-101774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_140 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
2 Hb_000307_090 0.0761306959 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
3 Hb_009711_020 0.0775620538 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
4 Hb_005736_060 0.0839348533 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
5 Hb_000334_210 0.0948124208 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
6 Hb_000030_290 0.0951848476 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
7 Hb_003599_040 0.0990486012 - - unnamed protein product [Vitis vinifera]
8 Hb_001616_040 0.0992859194 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
9 Hb_159809_020 0.099900405 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000537_080 0.101352474 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002676_090 0.101718939 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
12 Hb_003581_100 0.1029232198 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
13 Hb_004129_040 0.1057459252 - - PREDICTED: protein VACUOLELESS1 [Vitis vinifera]
14 Hb_002609_210 0.1057830848 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
15 Hb_000384_100 0.1067314516 - - hydrolase, putative [Ricinus communis]
16 Hb_002963_010 0.1072946186 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
17 Hb_010080_090 0.1087702785 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
18 Hb_001504_110 0.1091493056 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
19 Hb_001300_270 0.1094579391 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
20 Hb_001006_190 0.1109083481 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]

Gene co-expression network

sample Hb_002477_140 Hb_002477_140 Hb_000307_090 Hb_000307_090 Hb_002477_140--Hb_000307_090 Hb_009711_020 Hb_009711_020 Hb_002477_140--Hb_009711_020 Hb_005736_060 Hb_005736_060 Hb_002477_140--Hb_005736_060 Hb_000334_210 Hb_000334_210 Hb_002477_140--Hb_000334_210 Hb_000030_290 Hb_000030_290 Hb_002477_140--Hb_000030_290 Hb_003599_040 Hb_003599_040 Hb_002477_140--Hb_003599_040 Hb_000307_090--Hb_005736_060 Hb_159809_020 Hb_159809_020 Hb_000307_090--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_000307_090--Hb_000926_300 Hb_001235_190 Hb_001235_190 Hb_000307_090--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_000307_090--Hb_002963_010 Hb_000307_090--Hb_003599_040 Hb_009711_020--Hb_000030_290 Hb_002609_210 Hb_002609_210 Hb_009711_020--Hb_002609_210 Hb_001616_040 Hb_001616_040 Hb_009711_020--Hb_001616_040 Hb_009711_020--Hb_000334_210 Hb_004871_020 Hb_004871_020 Hb_009711_020--Hb_004871_020 Hb_005736_060--Hb_159809_020 Hb_001421_060 Hb_001421_060 Hb_005736_060--Hb_001421_060 Hb_004129_040 Hb_004129_040 Hb_005736_060--Hb_004129_040 Hb_005736_060--Hb_001616_040 Hb_005736_060--Hb_002963_010 Hb_000111_340 Hb_000111_340 Hb_000334_210--Hb_000111_340 Hb_003656_070 Hb_003656_070 Hb_000334_210--Hb_003656_070 Hb_001047_230 Hb_001047_230 Hb_000334_210--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_000334_210--Hb_003683_110 Hb_000334_210--Hb_001616_040 Hb_000030_290--Hb_001616_040 Hb_153544_010 Hb_153544_010 Hb_000030_290--Hb_153544_010 Hb_000030_290--Hb_000334_210 Hb_000331_470 Hb_000331_470 Hb_000030_290--Hb_000331_470 Hb_000030_290--Hb_002609_210 Hb_002284_240 Hb_002284_240 Hb_003599_040--Hb_002284_240 Hb_003599_040--Hb_159809_020 Hb_003599_040--Hb_000926_300 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_000327_190 Hb_000327_190 Hb_003599_040--Hb_000327_190 Hb_000007_100 Hb_000007_100 Hb_003599_040--Hb_000007_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7357 23.7787 18.0195 11.3694 21.9615 33.6454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.8903 71.9186 29.7381 26.7287 18.8539

CAGE analysis